SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9781

Length: 1472 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9781

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin ligase PUB14, putative n=1 Tax=Ricinus communis RepID=B9R6X8_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	protein	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	0.0	77%
Blast2go	Armadillo-type fold	IPR016024	-	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPL7

Fln msg: your sequence is shorter than subject: 272 - 376

Fln protein: VVTLAERLEEERGVMLLSSLLGPFTSHAVGTEAVGILVRLPLDSEGKTSLTEPAKISLMVDLLHEGTMETRINSAKLIETLVDIEDLKSENVSSFRLLFGLLRLVKDKKYPRAMAAGLSLLRIICSCKQVRNQVVGIGLVVQLVELLPYATIPCLETALAILDILSTTPEGRAALKDCACTIPNIVRVLMRVSENYKQHALSILWTVCKLAPEECTTTAVEAGIAAKLLLVIQSSCNPVVKQRSAELLKLCSLNYTATIFISKCKLTRTIQ*

Protein Length: 273

Fln nts: CGTCGTGACCTTGGCAGAAAGACTAGAGGAAGAAAGAGGGGTGATGTTGCTATCATCTCTGTTGGGTCCTTTCACTTCACACGCAGTTGGGACTGAAGCCGTTGGTATTCTGGTTAGGCTTCCTTTGGATTCAGAAGGAAAAACAAGCCTCACAGAACCTGCAAAGATCTCTCTAATGGTAGACCTTCTACATGAGGGTACCATGGAAACCAGAATAAATTCAGCAAAGCTTATTGAAACTCTAGTCGACATCGAAGATCTGAAGTCTGAGAATGTTTCCAGTTTTAGGCTTCTATTCGGTTTGTTGAGGCTTGTAAAGGACAAGAAGTATCCAAGGGCCATGGCAGCGGGACTCAGTTTGCTAAGAATTATTTGTTCTTGCAAGCAGGTGAGGAATCAGGTAGTTGGTATTGGATTAGTTGTGCAGTTGGTCGAGCTCCTTCCTTATGCAACAATCCCCTGTTTAGAGACTGCCCTGGCAATTCTGGACATTCTTTCTACAACACCAGAGGGTAGAGCTGCTCTAAAGGACTGTGCATGTACAATCCCCAACATAGTTAGAGTTCTAATGAGAGTTTCTGAAAACTACAAACAGCATGCGTTATCAATTTTGTGGACTGTATGTAAATTGGCACCGGAAGAGTGTACCACAACAGCAGTTGAGGCAGGGATAGCAGCAAAGTTGCTTCTTGTTATACAGAGCAGTTGTAACCCTGTTGTTAAACAAAGATCAGCAGAACTCCTAAAGCTTTGTAGCCTTAATTACACTGCCACAATCTTCATCTCCAAGTGCAAGCTCACCAGAACAATTCAGTAG___CTTCAAGCAACGATTTACATAGGGCTATGTTGATTTGGAGGTTTTCAGAGATAACATGTTTTCCTCTAAATCTTGAATGAATCAAGTGGATATCAGTGATTCAAGTGCGGTCATCTGGCTTTGAAACTTTAGCTGGTTATTCTTTTCTTTCTCTTTGTGTCTATTGCATGCAGAATTTAAATATCCTAGTATGGACGAAAAGTCCAAGATTCAAAATAATTGGGGCTGCTGGGGACTCTACTATATATTGGTATTTTTTCTCTCCCACAGCTTGCATAGACAAAATGGTTATTTCCGGCTGCAGAACTATGTACATGAGAGCAAGTTGTTGTTCCAGAGTGAACATCTTTATCACTATCAAATTCTAAAGCAGGTTTTCTCCTTGCCTCAACAATCACTCTCATGGGAGCTGTATGGTCTGCTCTGGTTTGACATGGTGTGAGGAATGTTATATTCCTTTATGTACAAAGAAAACAAGCTGTATACATATATATGCAAGGTGAAAGATAATGGGAACATTTGCAGGCAATATCAATCCATAGTTGTTTGGTCAGTTTCTCATTGATCAAGTTAACGGATTATTATTCCCTTTCAAATGGACTTTTTGTGATCCATTGTGGAAACAATGATCTGCTTGTTATAGTCTAAAGAAGTA

Fln Alignment:

sp_v1.1_unigene9781___EAVGILVRLPLDSEGKTSLTEPAKISLMVDLLHEGT-METRINSAKLIETL---------VDIEDLKSENXXXXXXXXXXXXXXKDKKYP-RAMAAGLSLLRIICSCKQVRNXXXXXXXXXXXXXXXPYATIP--CLETALAILDILSTTPEGRAALKDCACTIPNIVRVLMRVSENYKQHALSILWTVC-KLAPEECTTTAVEAGIAAKLLLVIQ-SSCNPVVKQRSAELLKLCS
B8LPL7______________QVAGVLVCFSLDDATKQRLRGPQVMKSMELLLGHGEHMETRLNAAILVESLTRDRASAREIGLRGPIIESLISLVERESDDGVEDYENYASEARIASLNALYNLCAVSRNRVKIAEAADAVPALADLLSSGVDKKVREKCLGILDALSTTAEGRVAIDDHTLALRAIVKSLLVVSNNANEYAVGIIWRICLKSGEGDVLNEALVVGAFKKLLVLVQIDSSSPATKVKANQLLKLFS

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
191	50		50		1.0
222		10		90	0.90298
469	80		20		0.995493
553		50		50	1.0
583			42	57	1.0
774		80	20		0.995493
776	80			20	0.995493
777		80	20		0.995493
778	80			20	0.995493
779	80	20			0.995493
780	20			80	0.995493
856	16			83	0.994512
860	83		16		0.994512
876		50		50	1.0
925	88	11			0.923564
933		88	11		0.923564
935		11		88	0.923564
942			11	88	0.923564
944		11	88		0.923564
946	88	11			0.923564
956		18	81		0.999994
959			18	81	0.999994
961		18		81	0.999994
966			18	81	0.999994
967			18	81	0.999994
970			15	84	0.999986
1063		12		87	0.999964
1064	81	6		12	0.999943
1066	87		12		0.999964
1067			12	87	0.999964
1068	87	12			0.999964
1072			87	12	0.999964
1073		12		87	0.999964
1075		14		85	0.999981
1077		14		85	0.999981
1306		18		81	0.999994
1307	81			18	0.999994
1432	40		60		1.0
1447	40			60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain