SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9773

Length: 1223 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9773

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phytocyanin homolog n=10 Tax=Pinus RepID=Q9LLZ7_PINTA	-	-	64%
FL-Next	tr=Putative phytocyanin; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	phytocyanin	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plastocyanin-like	IPR003245	-	0.0	83%
Blast2go	Cupredoxin	IPR008972	-	0.0	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8RIL7

Fln msg:

Fln protein: MAAVRGQVLVALGACLALAVLQSVAATTYTVGGSAGWTIPASNAKLYTDWVKATTFKLGDILVFKFATNVHNVYRVSKADYDKCVTTSPMEKYETGPASITLNSTGHHYYICAVSGHCAAGQKVSIKVSTAAAPGSSPSPAPGSSPATSNSSPAPGSSTSATPSSSGSAPGTSAGKSGASHSVSSDAAIFMAILSGFATLFL*

Protein Length: 204

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTAGAGCTGTTGCTGCTTTGTTCAGCCGCACGGACCGACTCTGTCCCCGCTTTTTGGGTATAAATATACGTCGTGACCTTGGCTGTCATTGGCAAAGCTTTTCTTTTGAGATCTGTTCTGCGCTGCTCTTCTCTGCTGTGCGATAAAATTTCACAGGCCTCAAGTCAAGAACGGGACGCTGCCGCAGGTGATAGGGTTGGGTATTGGGTCGGCCTGGGGACACAGAC_-_ATGGCAGCTGTAAGAGGACAGGTTCTTGTAGCTTTGGGGGCATGCCTTGCTCTAGCCGTTCTGCAGAGCGTGGCCGCAACGACCTACACCGTGGGCGGAAGCGCAGGATGGACTATTCCCGCCAGCAATGCCAAGCTCTACACCGACTGGGTTAAGGCCACAACCTTTAAGCTCGGTGATATCCTCGTGTTCAAATTCGCTACAAATGTGCACAATGTTTATCGAGTGAGCAAGGCGGATTACGACAAGTGCGTGACGACTAGCCCCATGGAAAAATACGAGACAGGCCCGGCTTCCATCACTCTCAACAGCACCGGCCACCATTACTACATCTGTGCAGTTTCCGGCCACTGTGCCGCCGGCCAGAAGGTGAGCATCAAGGTCTCCACTGCAGCTGCTCCCGGCAGTTCGCCATCGCCGGCTCCTGGGTCTTCTCCGGCTACATCCAATTCCTCTCCGGCTCCCGGATCGAGCACGTCTGCCACACCATCCAGTTCAGGAAGTGCCCCAGGTACGAGCGCCGGCAAGTCCGGTGCTTCTCACAGTGTCTCATCAGATGCAGCCATCTTCATGGCTATCCTTTCTGGATTTGCCACGCTCTTTCTCTGA___GCAATGGCTGTCATAATTATTATTAAAGTAGTGAGTTGTGGCTACTGAAACTCTTAAATTATTATGCGCGCTGTTTGGAGACATCTGTTATGCGGTATTATTTTTGTACGTATTGCTATATTTTTATTTGTGTGTTCAGCCTTATTACAGAATCCATGGTTATTCTAACTGATTGTCTGTTATCTATAGATAGGGTAAGTTCAATAGCAGTGTGCTTAGTGTTTTCTACATAAAATATAGCGTGTGTTTACATGTGAGCATCATAATCAATAAAATCTGCGCCGTGAAAACGGATGATATAATGTACATTGAAGTTTTTATATGCAATAAAATGGTAGCAGAAGGAGAGTAAATTGCAAC

Fln Alignment:

sp_v1.1_unigene9773___MAAVRGQXXXXXXXXXXXXXXQSVAATTYTVGGSAGWTIPASNAKLYTDWVKATTFKLGDILVFKFATNVHNVYRVSKADYDKCVTTSPMEKYETGPASITLNSTGHHYYICAVSGHCAAGQKVSIKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVSSDAAIFMAILSGFATLFL
B8RIL7______________MAAVRGQVLVALGACLALAVLQSVAATTYTVGGSAGWTIPASNAKLYTDWVKATTFKLGDILVFKFATNVHNVYRVSKADYDKCVTTSPMEKYETGPASITLNSTGHHYYICAVSGHCAAGQKVSIKVSTAAAPGSSPSPAPGSSPATSNSSPAPGSSTSATPSSSGSAPGTSAGKSGASHSVSSDAAIFMAILSGFATLFL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1163			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain