SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9762

Length: 2614 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9762
CGTCGTGACCTTGGCTGTCACTCAGGTCAGGTATTCAATCTTTTTACGGCGTTGCCCCTTGAAATGGAATGGTCCACTAGAGGAGGACAAACTATTGTAAATGTGAGAAATTTCAGCGGGATTTCTGGTCAAGTGTGTGCAAGATTTTCCTGCGTTGAATATCGGCTGGGATCTTGCTAAGTTTGGACCAAAGACATAATAGACGACAAACGCGTTCTATTTAATTTCATTTAATTGCCGGAAGGCAGTTGATAGAACATTTATTTCATCTGGTGGAATTCATGAGTAATTCTTACCCAGAGATCTGTGGAGACAGTAGAAAGGAGCGAAAAATTGGGCATTTACACAACTTTGATGCACAGAAGTAAAGTCTGTCCTGTTTTTATCATCTTCTACACCAAAGAGAAGGGTAGATTTGAAATTTTGTCCACAGCGGCTACAATTTGACTGCACTAATTGTGTCCACGTGGAGGGACGGTTGGCACAACTGTATCCATTGATGCTGCCATTACATAAAATGTTTTCACGGACATAATTATCTGAAGTCATTAATATATGTGTTGCATAATATCTTTATCAGTGTTCAGCCATATTTCGGTAGCTAGCGAAGAAAAGAAAGTGAAAAGCTCCCATCCCATGCCTCCAAGTGTGACATTCAAGTTTTGTGCAGTAGCCGGTGGACTGTATTGATGCCGCATATCCTTTTTCTATGTTCTTTAAGGCACTAGATTAAGCTGTTATGATTTTTCGAATCACGGGTGGTGCCGATCTGATCAAACTACTTGTTGAAAAACAAGAGCTTTTTCTGGTTCTTCAACCACTCATGGAAAGCTGGTGGTTCGCGCTGGAAAAAAACTCTTCTGTATTTTGCATCGACGCATGCCATTCAATGCAGTATTTTTGCTGTACCGGTGGAAATGAATGAAAATTTTCACCATCACTTGGACTGCCTCATAAAATAATTCCCTCGAAGCGTTCATGGTTTAATATTTATTTTTTTGTAGTACAAGTGGAAGTGGTGTTTGCTGGGAAGGCTTGCTAGATTCTCAGATTTGAGTTTCTTCAGTGAAGAATCATGGGAAATCAACTAAGTTGCATCCCCAAGAAGCGAGAAAAACATGTTAAAACGGGAAATAAGGTCAGGGTTATGTCAAAGAGGAAAATGGGATTGGAAGAAGAGCTCTTGCATCAGCAGGCTTTAGCCATGGCTCTGTATCAACAACAGATGACACAGGTGAGATCGATCTCGCAGCGTTTTCCAGCCCCTAGTTCCAAGCAAGGCCTTCCTAGAAGTTCAAGCGCGCGCCCTAGAAGTCATTCAGATCTTCTTGTGCCTTCAGACCAGCTGTTGAACAAAAAACAGGATGCAAGTGTTTTGGAGAATTTAGAGACTAAACACTTTGTCCTTATCCATGGGGGGGGATTTGGAGCATGGTGCTGGTACAAGTCGATTGCCTTACTGGAGGAAGCTGGTTTTGTAGCCACTGCATTGGATCTTACAGGGTCTGGGATTGATCACACAGAGACAAATAGCATCTCAACATTAGCTCAATACGTGAAGCCTCTTCTTGATTATTTGGAAACTCTTCCTGAGAGTGATAGAGTAATTTTAGCTTGCCATAATTTCGGTGGGGCATGTATATCTTATGCAATGGAGTGCTTTCCGAAAAAGATAGCAAAAGCAGTCTTCATAACTGCAACAATGGTGAAAGATGGACAAAGGGCATTCGACGCCATTGCCGAAGAGATAGCAGCTGCTAATGAGCTCATACAGGATGCACAAGTTTTTATTTATGGGAATGGCAATGAAAATCCTCCAACAGGTCTTGAGTTTGACAGGAACCAAGTGAAGGAGTTATTTTTCAACCAAAGCCCAACCAAGGATGTTGCCCTTGCGACTGTGTCCATGCGGCCAATTCCTTTTGCACCAATCTTGGAGAGGATTTCTCTCACGGAAGAGAATTATGGCAGTGTAAGACGTTTCTTCATTCAAACATCTGATGATCATGTTTTGACTCCAGCTGCTCAACAGCGGTTGATTGATGCAAATCCTCCAGAACGGGTTTTCAAGATCAAAGGCAGCGATCATTGCCCCTTCTTTGCAAAACCACAATCTTTACATAAATTGTTAGTGGAAATTGCTCAGCTGGAGAAAATTTGATGTAGGCCCGGATGTGAGTATGGTACTTCAACTAAGGTCTTCTATCTATGCAAAGTGACAATCGTAGAACCTATCATTTTAATCTATATTGAGAAGGCAGACATGGAGATGATGCAAGCGGAGTTCGGAATTGTCTGTTGGCAAGCTGTTACTATATTGTCTTTTATATTGCTAATTCTGAGGTAGCTTTTCAGAGGATCACAATCGGTTTGTACAATACTTTTAGGTACCTTGCCTAAATTTGGTATATCTGTGCATTACTCATAATAAAGTCAAATGTCGGGGGAAGCCAAACGTTTCCCTTTTGCCATTTTAGATATATCATTATTTCCCTAATTTTGTGGGTATCCTGCAAATTTCACCAATATGTTATAATTTATTATGGAATTCAATGGTTTTGATTTCAAACTTAAATTTGAAGAAGAATGCAAATTCCATTACCGATCAAAAAAA

Ace file of the UniGene sp_v1.1_unigene9762

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abhydrolase_1 domain containing protein	-	-	8.0e-07	18%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	polyneuridine-aldehyde esterase	-	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSC2

Fln msg: your sequence is longer than subject: 362 - 282

Fln protein: MGNQLSCIPKKREKHVKTGNKVRVMSKRKMGLEEELLHQQALAMALYQQQMTQVRSISQRFPAPSSKQGLPRSSSARPRSHSDLLVPSDQLLNKKQDASVLENLETKHFVLIHGGGFGAWCWYKSIALLEEAGFVATALDLTGSGIDHTETNSISTLAQYVKPLLDYLETLPESDRVILACHNFGGACISYAMECFPKKIAKAVFITATMVKDGQRAFDAIAEEIAAANELIQDAQVFIYGNGNENPPTGLEFDRNQVKELFFNQSPTKDVALATVSMRPIPFAPILERISLTEENYGSVRRFFIQTSDDHVLTPAAQQRLIDANPPERVFKIKGSDHCPFFAKPQSLHKLLVEIAQLEKI*

Protein Length: 363

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTCAGGTATTCAATCTTTTTACGGCGTTGCCCCTTGAAATGGAATGGTCCACTAGAGGAGGACAAACTATTGTAAATGTGAGAAATTTCAGCGGGATTTCTGGTCAAGTGTGTGCAAGATTTTCCTGCGTTGAATATCGGCTGGGATCTTGCTAAGTTTGGACCAAAGACATAATAGACGACAAACGCGTTCTATTTAATTTCATTTAATTGCCGGAAGGCAGTTGATAGAACATTTATTTCATCTGGTGGAATTCATGAGTAATTCTTACCCAGAGATCTGTGGAGACAGTAGAAAGGAGCGAAAAATTGGGCATTTACACAACTTTGATGCACAGAAGTAAAGTCTGTCCTGTTTTTATCATCTTCTACACCAAAGAGAAGGGTAGATTTGAAATTTTGTCCACAGCGGCTACAATTTGACTGCACTAATTGTGTCCACGTGGAGGGACGGTTGGCACAACTGTATCCATTGATGCTGCCATTACATAAAATGTTTTCACGGACATAATTATCTGAAGTCATTAATATATGTGTTGCATAATATCTTTATCAGTGTTCAGCCATATTTCGGTAGCTAGCGAAGAAAAGAAAGTGAAAAGCTCCCATCCCATGCCTCCAAGTGTGACATTCAAGTTTTGTGCAGTAGCCGGTGGACTGTATTGATGCCGCATATCCTTTTTCTATGTTCTTTAAGGCACTAGATTAAGCTGTTATGATTTTTCGAATCACGGGTGGTGCCGATCTGATCAAACTACTTGTTGAAAAACAAGAGCTTTTTCTGGTTCTTCAACCACTCATGGAAAGCTGGTGGTTCGCGCTGGAAAAAAACTCTTCTGTATTTTGCATCGACGCATGCCATTCAATGCAGTATTTTTGCTGTACCGGTGGAAATGAATGAAAATTTTCACCATCACTTGGACTGCCTCATAAAATAATTCCCTCGAAGCGTTCATGGTTTAATATTTATTTTTTTGTAGTACAAGTGGAAGTGGTGTTTGCTGGGAAGGCTTGCTAGATTCTCAGATTTGAGTTTCTTCAGTGAAGAATC_-_ATGGGAAATCAACTAAGTTGCATCCCCAAGAAGCGAGAAAAACATGTTAAAACGGGAAATAAGGTCAGGGTTATGTCAAAGAGGAAAATGGGATTGGAAGAAGAGCTCTTGCATCAGCAGGCTTTAGCCATGGCTCTGTATCAACAACAGATGACACAGGTGAGATCGATCTCGCAGCGTTTTCCAGCCCCTAGTTCCAAGCAAGGCCTTCCTAGAAGTTCAAGCGCGCGCCCTAGAAGTCATTCAGATCTTCTTGTGCCTTCAGACCAGCTGTTGAACAAAAAACAGGATGCAAGTGTTTTGGAGAATTTAGAGACTAAACACTTTGTCCTTATCCATGGGGGGGGATTTGGAGCATGGTGCTGGTACAAGTCGATTGCCTTACTGGAGGAAGCTGGTTTTGTAGCCACTGCATTGGATCTTACAGGGTCTGGGATTGATCACACAGAGACAAATAGCATCTCAACATTAGCTCAATACGTGAAGCCTCTTCTTGATTATTTGGAAACTCTTCCTGAGAGTGATAGAGTAATTTTAGCTTGCCATAATTTCGGTGGGGCATGTATATCTTATGCAATGGAGTGCTTTCCGAAAAAGATAGCAAAAGCAGTCTTCATAACTGCAACAATGGTGAAAGATGGACAAAGGGCATTCGACGCCATTGCCGAAGAGATAGCAGCTGCTAATGAGCTCATACAGGATGCACAAGTTTTTATTTATGGGAATGGCAATGAAAATCCTCCAACAGGTCTTGAGTTTGACAGGAACCAAGTGAAGGAGTTATTTTTCAACCAAAGCCCAACCAAGGATGTTGCCCTTGCGACTGTGTCCATGCGGCCAATTCCTTTTGCACCAATCTTGGAGAGGATTTCTCTCACGGAAGAGAATTATGGCAGTGTAAGACGTTTCTTCATTCAAACATCTGATGATCATGTTTTGACTCCAGCTGCTCAACAGCGGTTGATTGATGCAAATCCTCCAGAACGGGTTTTCAAGATCAAAGGCAGCGATCATTGCCCCTTCTTTGCAAAACCACAATCTTTACATAAATTGTTAGTGGAAATTGCTCAGCTGGAGAAAATTTGA___TGTAGGCCCGGATGTGAGTATGGTACTTCAACTAAGGTCTTCTATCTATGCAAAGTGACAATCGTAGAACCTATCATTTTAATCTATATTGAGAAGGCAGACATGGAGATGATGCAAGCGGAGTTCGGAATTGTCTGTTGGCAAGCTGTTACTATATTGTCTTTTATATTGCTAATTCTGAGGTAGCTTTTCAGAGGATCACAATCGGTTTGTACAATACTTTTAGGTACCTTGCCTAAATTTGGTATATCTGTGCATTACTCATAATAAAGTCAAATGTCGGGGGAAGCCAAACGTTTCCCTTTTGCCATTTTAGATATATCATTATTTCCCTAATTTTGTGGGTATCCTGCAAATTTCACCAATATGTTATAATTTATTATGGAATTCAATGGTTTTGATTTCAAACTTAAATTTGAAGAAGAATGCAAATTCCATTACCGATCAAAAAAA

Fln Alignment:

sp_v1.1_unigene9762___KHFVLIHGGGFGAWCWYKSIALLEEAGFVATALDLTGSGIDHT-ETNSISTLAQYVKPLLDYLETLPESDRVILACHNFGGACISYAMECFPKKIAKAVFITATMVKDGQRAFDXXXXXXXXXNELIQDAQVFIYGNGNENPPTGLEFDRNQVKELFFNQSPTKDVALATVSMRPIPFAPILERISLTEENYGSVRRFFIQTSDDHVLTPAAQQRLIDANPPERVFKIKGSDHCPFFAKPQSLHKLLVEIAQL
A9NSC2______________QHFVLIHGLGHVAWCWYKIVTLLKQKGHRVAALDLTSNGINRAASTDQVNSIAHYAEPLLEYIRNLGNNEKVTLVGHSLAGCPLSYAMELYPSKITKAIFVAAFTPRNNQSFLSSANPKSFA--RLVENGVLVLNVKADSELPTSASLVLDHVKSYLYNESPDEDANLAQSLLTPTPFPVSVEFLKLSEERYESIRRFYIMLMKDRLFPPEYQEYSIAQNPPEKIFKMHASDHSPFFSQPQQLCNLLVHIATL

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
273		27	72		1.0
277	27		72		1.0
278	72	27			1.0
279	72	27			1.0
282		72	27		1.0
283	72		27		1.0
290		27	72		1.0
347		12		87	0.992554
395		88	11		0.923564
396			11	88	0.923564
397			11	88	0.923564
492	90		10		0.90298
607		90	10		0.90298
608			10	90	0.90298
790		50	50		1.0
980		75		25	1.0
981	12	12	75		0.975346
982	25	12		62	1.0
983		25		75	1.0
984		87	12		0.992554
985	62		12	25	1.0
986		12		87	0.992554
987			87	12	0.992554
989		25		75	1.0
990		12		87	0.992554
991			25	75	1.0
992	62	12		25	1.0
993	75	25			1.0
996		25		75	1.0
998		25		75	1.0
1089	84		15		0.999986
1841		11		88	0.923564
1843	88			11	0.923564
1845	88		11		0.923564
1846			88	11	0.923564
1852	88			11	0.923564
1853	88			11	0.923564
1857	88	11			0.923564
1858	88			11	0.923564
1860			88	11	0.923564
1862		11	88		0.923564
1864		11		88	0.923564
1921	12	87			0.992554
1956	11	88			0.923564
1958		88	11		0.923564
1959	88		11		0.923564
1960		88	11		0.923564
1979			11	88	0.923564
2613	20			80	0.995493
2614	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain