SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9743

Length: 1269 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9743

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeoyl CoA O-methyltransferase n=6 Tax=Picea RepID=Q1JR82_PICAB	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	caffeoyl o-methyltransferase	-	-	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	O-methyltransferase, family 3	IPR002935	-	0.0	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLL5

Fln msg: Separated hits, possible frame ERROR between 657 and 666,

Fln protein: MASTAVQQTEVKAETTQAEEPAKVARHQEVGHKSLLQSDALYQYILETSVYPREPAPLKELREVTAKHPWNLMTTSADEGQFLGLLLKLINAKNTMEIGVYTGYSLLSTALALPDDGKILAMDINxxxxFDIGLPIIEKAGVAHKIDFREGPALPLLDEMLQKEEMHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGVIAYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEISQIPVGDGVTLCRRL*

Protein Length: 261

Fln nts: ATGGGGATTGAATGCTCGGGGAGATGTAGGCTGGATAATTTGCTAATGCCTAGTTTCTTAATTCGGGTTTCAGAATTCGCGTGTTAACAGATTATCCAGCCTGCATCTTGCCAGGCATTCAATAACCTATCGCTGGCTCGCTGGGTGGTTAGGAGCTGGGTCGATAATGATTAATTTACAGAAATTGCTGCATAGTTATAGCACTTGGCATCAATTGAATGTAATGTGCTACATTATTGCAGCGCTAGCTGGTTCTGGATCTGCTTTCAATTGTCAAAG_-_ATGGCAAGCACAGCTGTTCAACAGACAGAAGTGAAGGCGGAAACAACCCAAGCAGAGGAGCCGGCCAAGGTTGCTCGCCATCAAGAAGTGGGCCACAAAAGTCTTTTGCAGAGCGATGCCCTCTATCAGTATATATTGGAAACGAGCGTGTACCCTCGTGAGCCTGCGCCATTAAAGGAGCTCCGAGAAGTAACGGCCAAACATCCCTGGAACCTCATGACTACCTCTGCTGATGAGGGTCAATTTCTGGGCCTCCTGCTGAAGCTGATTAACGCCAAGAACACTATGGAGATTGGGGTGTACACTGGTTACTCGCTTCTCAGCACAGCCCTTGCATTGCCCGATGATGGAAAGATTCTAGCAATGGACATTAACAGxxxxxxxxxCTTCGATATCGGACTGCCGATTATCGAGAAAGCAGGAGTTGCCCACAAGATCGACTTTAGAGAGGGCCCTGCTCTGCCCCTTTTGGACGAAATGCTTCAAAAGGAGGAGATGCATGGATCGTTTGATTTCGTGTTCGTGGATGCTGACAAAGACAACTATTTGAACTACCACAAGCGGTTGATCGATCTGGTGAAGGTTGGGGGTGTGATTGCATACGACAACACCCTCTGGAACGGATCGGTGGTGGCTCCTCCTGATGCGCCGCTGAGAAAATACGTGAGATATTACAGAGATTTCGTGCTGGAGCTGAACAAAGCTCTAGCTGCCGATCCCCGCATTGAGATCAGCCAAATCCCAGTCGGCGATGGCGTTACCCTCTGCAGGCGCCTCTGA___ACTTCATCCATTGAAGGAATTTGGTAGGCAACTATGTATATCAATATATTGTACGCATTTTCCCGAGATGTCTAATCTCATTTGTGTCCCACCTCCCTGGACTGGCCAATGATCTGACGCTATCTTTGTTTTAAAAGGAGGCAAACTTGTTATGGGATTCTCTCCGTCTTCAATGATGCAATAAGCAAAGGGATAAATGTCTTATTATTTC

Fln Alignment:

sp_v1.1_unigene9743___MASTAVQQTEVKAETTQAEEPAKVARHQEVGHKSLLQSDALYQYILETSVYPREPAPLKELREVTAKHPWNLMTTSADEGQFLGLLLKLINAKNTMEIGVYTGYSLLSTALALPDDGKILAMDINRxxxFDIGLPIIEKAGVAHKIDFREGPALPLLDEMLQKEEMHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGVIAYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEISQIPVGDGVTLCRRL
A9NLL5______________MASTAVQQTEMKAETTKAEEPAKVARHQEVGHKSLLQSDALYQYILETSVYPREPEPLKELREVTAKHPWNLMTTSADEGQFLGLLLKLINAKNTMEIGVYTGYSLLSTALALPDDGKILAMDINRxxxYDLGLPMIEKAGVAHKIDFREGPALPLLDQMIQNEELHGSFDFVFVDADKDNYLNYHKRLIDLVKVGGVIAYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAADPRIEISQIPVGDGVTLCRRV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
43		83		16	0.994512
58		16		83	0.994512
64	16	83			0.994512
80	14	85			0.993533
113	71		28		1.0
127		85		14	0.993533
145		16	83		0.994512
152	14		85		0.993533
154	85	14			0.993533
163	14		85		0.993533
292	75		25		1.0
434		69		30	1.0
484	22	77			1.0
1165		80		20	0.996423

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain