SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9740

Length: 2090 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9740
ATGGGGGCGATCACACTAGCACAGAGTTTTACCCCAAAACCAACCTCGTCGTGACCTTGGCTGTCACTCAGTGTATCCATTGGAGCAAAAAATATTGAAGTACCGAAGCCATGATCGCTGCACACACATTTGGAGAGATCTTTTTATGAATACGGCCAAATACGGTCCCATATCTAGATTTCCACATGTTTGCTAATCGTACACTCCGGAGCCAAGCGAATTCACACGCGTAGCAATTATAAGAAACAGTTCTGAAAATTTACGGATTACAAAAACAAAGAGGAAGGTGCCGAGATTGGAAATTAGAAACAGCAAAACAAGGTACAAAGCGAGATGTCTCTTACCGGGCTGAAGATGACGGAGGAGGTCTGGCTCACATGCCTTACCCACGCTCTTTCCACTGAAACTGAAGAAATCATGGGTCTTTTACTCGGAGATGTCGAGTATTTAAGCAATGGGAGTTCAACTGCACTTGTTTGGGGTGCTGCTCCTCAACCCCGATGCGATCGCCGGAAAGACCGCGTCGAGACCAATCCCGAGCAACTGGCAGCGGCGTCTGCTCTAGCCGAGAGAATGTCAGCAGAAATTGGAAGAACAACAAGAGTGATAGGATGGTACCATTCGCATCCACATATTACTGTCCTTCCTTCACATATTGATGAGCGGACACAAGGATTGTATCAGTTGCTAGATCCAGGATTTATTGGTGTAATATTTTCTTGTTTTAGCGAGGATGCCCAGAAGGTTGGTAGGATTCAAGTAATAGCTTTTCAGGCCCTTGATGGGAAGCAAAAACACCTAACACGGGTTCCTGTTCAAGTAGCTCAGGCAATTGTTGTTGCTGGTTCAGAAACGGAGTTGACAAGAACTACATTAGGAAGTTCGATGCCAAAATCCACAACTGGACAGCCAGAAATAATTGACCTAGATCCCGTGAACCCAAAGGCTTCAGTTGGTACTGTTAAGTTCCAAATTGGAGATAAAACACAAACTGCTTTGGACAAATTCTTTGACAGTGCTGAATCTGAATCATCTCGAAGAAGAGAGAAGATGGGACCAGAATCAGTTTCTCTTTATCACAATGGAAGCTTGAGGAGCTCACTTAGTGATTTGGATTCAATGGACTTGACTTCCAGGATGCAGGAGGCTGTGCATCGGTCAACTTTGGATGTGAGTGGTGCAGAGTATGCAAGGAAGGAGGTTCCACTGCAAGTTGGCACTGGCCATCCTGTTGCGAAATTTGAATTTCCTTTAAGCTCGTTTGTTGATTTACAGAAATTACTTTTTACAGAGGAACAAACAGCTTATAACCAGGCTATGTCACAGAGTGCAAGGAATGGTAAAGTACACCCTCTTGCAGCGATTCATCATTCATCAACATACCAAGCCTCAATGTGCAAGCTCATGGAGTACTGTCTATCTCCAGTTATTAGTTCTCTTTGGGACCGCCTGGAGGAGAACAAACTGAGGATAGCAATGCTACAAGAAGAAGCTATTTCTTTAGAACTTGAACTTTTCAACAAAGGGAGTCATAGTGTTCAGCCTTCAAGGCGTTCCTCAAATAGGGGTGCAGTTTATGCTGGATCCCCAGAGCCAAAATCATCAATGGATTCATTATCAAACGTCAGAGGCTTCAGTCCTATGGGTGGCGTGAATCCCCGTCATAGTACAAATCGGTAGCCAGATGTCATCTAGACAAAATATTAGCAACCATAAATATAGCTCAATGTTTTATATGTTCTTGTACACCATTGGGGAAATTGCTCTTAGTGGTGTTTGGTTGTACTGGAATTATTGAACGGTTTTATCCAACTGGTACTTTCTTGGGGAATTTTGACATACAGAAGTGAAGATCCCCAGAAGATACGTGCAATGCTGTTTATTTTGTATCATGTAAAATTTGCCTTATACTACTTATGTAGAATTTTGTGACAATGAAATTGGTTACTTCTCTAGCTTTCATGTTGCATGTCATCAACCTTGTAAGCAGTTGCGCCATTGAAACAACAATAGGAGGCAAATGAAATCAATTAGAGTTTGTATAACCTTTTCAAGGATTACCATGCAACTATTTCCTATTAGCAATATTA

Ace file of the UniGene sp_v1.1_unigene9740

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mov34 family protein; K11864 BRCA1/BRCA2-containing complex subunit 3	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	at3g06820 f3e22_4	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW21

Fln msg:

Fln protein: MSLTGLKMTEEVWLTCLTHALSTETEEIMGLLLGDVEYLSNGSSTALVWGAAPQPRCDRRKDRVETNPEQLAAASALAERMSAEIGRTTRVIGWYHSHPHITVLPSHIDERTQGLYQLLDPGFIGVIFSCFSEDAQKVGRIQVIAFQALDGKQKHLTRVPVQVAQAIVVAGSETELTRTTLGSSMPKSTTGQPEIIDLDPVNPKASVGTVKFQIGDKTQTALDKFFDSAESESSRRREKMGPESVSLYHNGSLRSSLSDLDSMDLTSRMQEAVHRSTLDVSGAEYARKEVPLQVGTGHPVAKFEFPLSSFVDLQKLLFTEEQTAYNQAMSQSARNGKVHPLAAIHHSSTYQASMCKLMEYCLSPVISSLWDRLEENKLRIAMLQEEAISLELELFNKGSHSVQPSRRSSNRGAVYAGSPEPKSSMDSLSNVRGFSPMGGVNPRHSTNR*

Protein Length: 450

Fln nts: ATGGGGGCGATCACACTAGCACAGAGTTTTACCCCAAAACCAACCTCGTCGTGACCTTGGCTGTCACTCAGTGTATCCATTGGAGCAAAAAATATTGAAGTACCGAAGCCATGATCGCTGCACACACATTTGGAGAGATCTTTTTATGAATACGGCCAAATACGGTCCCATATCTAGATTTCCACATGTTTGCTAATCGTACACTCCGGAGCCAAGCGAATTCACACGCGTAGCAATTATAAGAAACAGTTCTGAAAATTTACGGATTACAAAAACAAAGAGGAAGGTGCCGAGATTGGAAATTAGAAACAGCAAAACAAGGTACAAAGCGAG_-_ATGTCTCTTACCGGGCTGAAGATGACGGAGGAGGTCTGGCTCACATGCCTTACCCACGCTCTTTCCACTGAAACTGAAGAAATCATGGGTCTTTTACTCGGAGATGTCGAGTATTTAAGCAATGGGAGTTCAACTGCACTTGTTTGGGGTGCTGCTCCTCAACCCCGATGCGATCGCCGGAAAGACCGCGTCGAGACCAATCCCGAGCAACTGGCAGCGGCGTCTGCTCTAGCCGAGAGAATGTCAGCAGAAATTGGAAGAACAACAAGAGTGATAGGATGGTACCATTCGCATCCACATATTACTGTCCTTCCTTCACATATTGATGAGCGGACACAAGGATTGTATCAGTTGCTAGATCCAGGATTTATTGGTGTAATATTTTCTTGTTTTAGCGAGGATGCCCAGAAGGTTGGTAGGATTCAAGTAATAGCTTTTCAGGCCCTTGATGGGAAGCAAAAACACCTAACACGGGTTCCTGTTCAAGTAGCTCAGGCAATTGTTGTTGCTGGTTCAGAAACGGAGTTGACAAGAACTACATTAGGAAGTTCGATGCCAAAATCCACAACTGGACAGCCAGAAATAATTGACCTAGATCCCGTGAACCCAAAGGCTTCAGTTGGTACTGTTAAGTTCCAAATTGGAGATAAAACACAAACTGCTTTGGACAAATTCTTTGACAGTGCTGAATCTGAATCATCTCGAAGAAGAGAGAAGATGGGACCAGAATCAGTTTCTCTTTATCACAATGGAAGCTTGAGGAGCTCACTTAGTGATTTGGATTCAATGGACTTGACTTCCAGGATGCAGGAGGCTGTGCATCGGTCAACTTTGGATGTGAGTGGTGCAGAGTATGCAAGGAAGGAGGTTCCACTGCAAGTTGGCACTGGCCATCCTGTTGCGAAATTTGAATTTCCTTTAAGCTCGTTTGTTGATTTACAGAAATTACTTTTTACAGAGGAACAAACAGCTTATAACCAGGCTATGTCACAGAGTGCAAGGAATGGTAAAGTACACCCTCTTGCAGCGATTCATCATTCATCAACATACCAAGCCTCAATGTGCAAGCTCATGGAGTACTGTCTATCTCCAGTTATTAGTTCTCTTTGGGACCGCCTGGAGGAGAACAAACTGAGGATAGCAATGCTACAAGAAGAAGCTATTTCTTTAGAACTTGAACTTTTCAACAAAGGGAGTCATAGTGTTCAGCCTTCAAGGCGTTCCTCAAATAGGGGTGCAGTTTATGCTGGATCCCCAGAGCCAAAATCATCAATGGATTCATTATCAAACGTCAGAGGCTTCAGTCCTATGGGTGGCGTGAATCCCCGTCATAGTACAAATCGGTAG___CCAGATGTCATCTAGACAAAATATTAGCAACCATAAATATAGCTCAATGTTTTATATGTTCTTGTACACCATTGGGGAAATTGCTCTTAGTGGTGTTTGGTTGTACTGGAATTATTGAACGGTTTTATCCAACTGGTACTTTCTTGGGGAATTTTGACATACAGAAGTGAAGATCCCCAGAAGATACGTGCAATGCTGTTTATTTTGTATCATGTAAAATTTGCCTTATACTACTTATGTAGAATTTTGTGACAATGAAATTGGTTACTTCTCTAGCTTTCATGTTGCATGTCATCAACCTTGTAAGCAGTTGCGCCATTGAAACAACAATAGGAGGCAAATGAAATCAATTAGAGTTTGTATAACCTTTTCAAGGATTACCATGCAACTATTTCCTATTAGCAATATTA

Fln Alignment:

sp_v1.1_unigene9740___MGLLLGDVEYLSNGSSTALVWGAAPQPRCDRRKDRVETNPEQXXXXXXXXXXXXXXIGRTTRVIGWYHSHPHITVLPSHIDERTQGLYQLLDPGFIGVIFSCFSEDAQKVGRIQVIAFQALDGKQKHLTRXXXXXXXXXXXXGSETELTRTTLGSSMPKSTTGQPEIIDLDPVNPKASVGTVKFQIGDKTQTALDKFFDSAXXXXXXXXXKMGPESVSLYHNGXXXXXXXXXXXXXXXXXXQEAVHRSTLDVSGAEYARKEVPLQVGTGHPVAKFEFPLSSFVDLQKLLFTEEQTAYNQAMSQSARNGKVHPLAAIHHSSTYQASMCKLMEYCLSPVISSLWDRLEENKLRIAMLQEEAISLELELFNKGSHSVQPSRRSSNRGAVYAGSPEPKSSMDSLSNVRGFSPMGGVNPRHSTNR
A9NW21______________MGLLLGDVENLNNGSSTALVWGAAPQPRCDRRKDRVETNPEQLAAASALAERMSAEVGRTTRVIGWYHSHPHITVLPSHIDERTQGLYQLLDPGFIGVIFSCFSEDAQKVGRIQVIAFQALDGKHKHLTRVPVQVAPVNVVAGSEAELTRTTLGNSMPKSTTGQPEIIDLDPVNTKVSVGTTKFQIGDKTQTALDKFFDNAESESSRRRDKMGPESASPYHNGSLRNSISNLDSMDLTSRMQEAVHRSTLDVSGAEYARKEVPLQVVTGHPVAKFEFPLSSFVDLQHLLFTEEQIAYNQAMLQSARNGRVHPLAAIHHSSTYQASMCKLMEYCLSPVISSLWDRLEENKLRLAMLQEEAISLELELFNKGSHSVQPSRRSSNRGAVYAGSPEPKSSMDSLSNVRGFSPMGGMIPRQSTNR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
677	33		66		0.997452
1014	11			88	0.923564
1263	25		75		0.996473
1384		16		83	0.994512
1509	84	15			1.0
1515	84		15		1.0
1519		5	11	83	0.999887
1523	88			11	0.999937
1692	20	80			1.0
1825	12			87	0.999964
2066	40		60		1.0
2079		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain