SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9718

Length: 994 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9718

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3527 domain containing protein	-	-	1.0e-19	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	49%
Blast2go	uncharacterized protein	-	-	7.39438e-21	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	7.39438e-21	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF3527	IPR021916	-	7.39438e-21	63%

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
3	50		50		1.0
4			40	60	1.0
5			40	60	1.0
173	50	50			1.0
640		16		83	0.994512
738		10		90	0.90298
753	10	90			0.90298
754		80		20	0.999996
762	20		80		0.999996
769		11		88	0.923564
775	11		88		0.923564
806		11	88		0.923564
807		22		77	0.999999
808	11	88			0.923564
809	87	12			0.992554
816		12		87	0.992554
818		12		87	0.992554
822	12		75	12	0.975346
823		87		12	0.992554
824			87	12	0.992554
827	12		87		0.992554
828	12		87		0.992554
829	12	87			0.992554
832	12			87	0.992554
840	10			90	0.90298
850		30		70	1.0
851	90		10		0.90298
855		90		10	0.90298
860	10		90		0.90298
871			62	37	1.0
876	12		87		0.992554
889	12	87			0.992554
896	83	16			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
562	578	AAT AAT AAT AAT AAT AA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain