SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9681

Length: 462 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene9681
TGTTCATCAAATCTCTCCAGAAGCTTACCAATATAGTTCTGATAGATACAGAGAAAATGCCCCTGTTAAGTGCATGGATGGAACAGTTCTCTAAAACCGACGGAGTGAAAGAAGTTTTTCCTGATCCGGCTAAGGTATTCGAATTTATATCCGCCATGAGAGACAAATTTACATCACCACCTGCTGGTAACTAGATAGAGCCACGTCGACCTAATAAAACGAGGGCAGAGAGCCAAATAATATTTAGATTGAAGTTATCGTCGGTCATGTTTTGTTTCAATATTGCGAGTCCGAACGTTGGAGCAGTTCGTCATGCGAATTTGAATACGTGTATGAATTGGTGGGCGATATAGCTCGCTGTACTTGTACTTCGTCAGTGTTACAATGTATATGTATCCATCGTTGCCGTTAACTTGTTTTGAAATTTTAAATTAGGTTTCATGTGAATCTATTTTTGTGAAC

Ace file of the UniGene sp_v1.1_unigene9681

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable glutathione S-transferase n=1 Tax=Picea mariana RepID=O65056_PICMA	-	-	2.0e-18	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	tau class glutathione s-transferase	-	-	6.1786e-19	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	6.1786e-19	79%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMC7

Fln msg: atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning,

Fln protein: FIKSLQKLTNIVLIDTEKMPLLSAWMEQFSKTDGVKEVFPDPAKVFEFISAMRDKFTSPPAGN*

Protein Length: 65

Fln nts: TGTTCATCAAATCTCTCCAGAAGCTTACCAATATAGTTCTGATAGATACAGAGAAAATGCCCCTGTTAAGTGCATGGATGGAACAGTTCTCTAAAACCGACGGAGTGAAAGAAGTTTTTCCTGATCCGGCTAAGGTATTCGAATTTATATCCGCCATGAGAGACAAATTTACATCACCACCTGCTGGTAACTAG___ATAGAGCCACGTCGACCTAATAAAACGAGGGCAGAGAGCCAAATAATATTTAGATTGAAGTTATCGTCGGTCATGTTTTGTTTCAATATTGCGAGTCCGAACGTTGGAGCAGTTCGTCATGCGAATTTGAATACGTGTATGAATTGGTGGGCGATATAGCTCGCTGTACTTGTACTTCGTCAGTGTTACAATGTATATGTATCCATCGTTGCCGTTAACTTGTTTTGAAATTTTAAATTAGGTTTCATGTGAATCTATTTTTGTGAAC

Fln Alignment:

sp_v1.1_unigene9681___FIKSLQKLTNIVLIDTEKMPLLSAWMEQFSKTDGVKEVFPDPAKVFEFISAMRDKFTSPPAGN
A9NMC7______________YVKALEKATNSVLIDVEKLPLLSAWMDRFCKADGVKEVMPDPAKLLEFIFAFRGRFTSPPAAN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
134		66	33		0.997452
286		37		62	1.0
406	28	71			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain