SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9668

Length: 2033 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9668
CGTCGTGACCTTGGCTGTCACTCAACTTCTTTGTTTTTGAATAGAGCAGATGGAGTCCTTTAAAGCCATGCTGGAAGATGAATGGTATATGCCAGGGGGCCAGGATAATAACTCTCTCGTCGTGACCTTGGCTGTCACTCATTTGTTTCTGCCCCTGAAACATCAAGTGCGTTCAGTTTGGATCCTTCCCGTGTACAGTCATTCATGTCTTTTGTACCCAGAAAGAAAACGCTTCCAAATACAAGCATGTCTTCTCTTCTAGACGCTGGTGCGGGAGCTTCCAGTACGAGCAATTTCGATGGCAATGTGGGATTGATGGGGAGTCCGTCGTTGCCTCCTCCCGTCAATTTTGGGATTGGGGGAGCCATGGTTTCGGGGTTTAATGCACCCTCGCTTCTTTTTAACCCCAGCGGGATTCAGCTGCTCGGTTCCTCCATGCCCTCCTCAACTCCGGTTGGCAGTCTGAATCCTTGCCTGCAATTTGCAGGAAATGACTATAATAGCATGCTCGTCAATGGCGGCGTAGTAGACAGTGGCCTGAGCGGTCTTCTCGTCAGAGGTGGTCACGATCCCGGGTCATCATTGTTAGGCAATAGGTCTAAAGCTGAGCGTGGCCAGGCCACTTTATTTCAGAAGCGAGCCATGGCCAGGCATTCCTCGCCAGCTCCATTGCTGCCTGACGAAGAGAGCCCCAACACCAGGGCATTGCCCAAGTCTCCCAAAGGAGACGGGGTCCGGGTCCAGATTTCGAATCCCGAGGAGGAAGGTGAAGAGCAATTGGCAGGAGAAGACAACATGGACGACGAGAGCGGAGGCGGTGGGTCAGGGTTGCTTTATGAAACCGACGACGCCAAACCGGAACAAGCCATGTCAGGTCAAGATGGCCCCGCCCCTGGCCCTGGCCCTCCAGCAGATAAAGGGAAAAGGAAGGGCTTGCCTGCAAAGAATCTCATGGCAGAGCGTAGGCGCAGAAAGAAGCTTAACGATCGCCTCTACATGCTTCGCTCAGTTGTTCCCAAGATTTCAAAGATGGACAGGGCATCGATTCTTGGCGATGCGATTGAGTACTTGAAGGAACTTCTGCAGCGTATAAATGATCTCCATACAGAACTGGAAGGGACTTCAGAGAGGCCACTGTCAGCTACTGCCCTGCCTCTACCTCTGAATCTGCCTGTTCCTTCTGCCTTCCATTATCCCTTGACTCCTTCCACGCCACCGCTTATCCCTTGCCGTATCAAGGAAGAATGTCCTCCCATTTCACTGCCTGCGCACTCAGAGGCATCAGATTCTCAGCCTGCAAGGGTAGAGGTAAAGACCAGAGATGGAAGGTCCCTCAACATTCACATGTTTTGTGCGAGAAGGCCCGGATTGTTGCTTTCCACGATGAGGGCATTGGATGAGCTTGGCCTTGATGTTCAACAGGCTGTTATTAGCTGCTTTAATGGATTTGCTTTGGACGTTTTCCGAGCAGAGCAGTCCAGAGGGGGAGGGATATTGCACTGGAGGAGATCAAAAGCCGTTCTTTTGCACACTGCAAACAGTCATCAGATAACAATGTAGCTCAGTGGTTTGCCCCCCTCACCCCATCCCATAATTTGCAGAGAGTTGTATACTAGCCACTAACCATACTTTATCTAGGTATCCTCATACAACTTTATATACTTCTGCAACTAACAAAACTTTTCATGACCCCCTGCGTTTTCTACTACTGGCATATTCTGAGTATTGATGCCCATCAGGGAGAGTCTGCATTGTTGGTCTTATTTGTTTCTCTGTTGCCCATCATCATGAAACATGAGATCCTCATGTACAGTGGCTTATTATTATGTATTGCCCTCTCGAGATATTATAGAGAAAGATTAAATTTCAAAGCTTTTTCTTCCTGCGTTAGTCTTTGAATTTCAAACTCTGTTGTGTCATTATAGTGAATTACAGAATACTTTCGATTGTTGGTAGGTGGATTACAAGGCCCTGCCTCGTGTACTTGCTTGCAATATGCATCATTGCAATGTACAACATTCTCTAACAGAAAT

Ace file of the UniGene sp_v1.1_unigene9668

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ICE1; ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription activator/ transcription factor	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	inducer of cbf expression 1	-	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A934

Fln msg: your sequence is longer than subject: 452 - 175

Fln protein: MSFVPRKKTLPNTSMSSLLDAGAGASSTSNFDGNVGLMGSPSLPPPVNFGIGGAMVSGFNAPSLLFNPSGIQLLGSSMPSSTPVGSLNPCLQFAGNDYNSMLVNGGVVDSGLSGLLVRGGHDPGSSLLGNRSKAERGQATLFQKRAMARHSSPAPLLPDEESPNTRALPKSPKGDGVRVQISNPEEEGEEQLAGEDNMDDESGGGGSGLLYETDDAKPEQAMSGQDGPAPGPGPPADKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHTELEGTSERPLSATALPLPLNLPVPSAFHYPLTPSTPPLIPCRIKEECPPISLPAHSEASDSQPARVEVKTRDGRSLNIHMFCARRPGLLLSTMRALDELGLDVQQAVISCFNGFALDVFRAEQSRGGGILHWRRSKAVLLHTANSHQITM*

Protein Length: 453

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCTTTGTTTTTGAATAGAGCAGATGGAGTCCTTTAAAGCCATGCTGGAAGATGAATGGTATATGCCAGGGGGCCAGGATAATAACTCTCTCGTCGTGACCTTGGCTGTCACTCATTTGTTTCTGCCCCTGAAACATCAAGTGCGTTCAGTTTGGATCCTTCCCGTGTACAGTCATTC_-_ATGTCTTTTGTACCCAGAAAGAAAACGCTTCCAAATACAAGCATGTCTTCTCTTCTAGACGCTGGTGCGGGAGCTTCCAGTACGAGCAATTTCGATGGCAATGTGGGATTGATGGGGAGTCCGTCGTTGCCTCCTCCCGTCAATTTTGGGATTGGGGGAGCCATGGTTTCGGGGTTTAATGCACCCTCGCTTCTTTTTAACCCCAGCGGGATTCAGCTGCTCGGTTCCTCCATGCCCTCCTCAACTCCGGTTGGCAGTCTGAATCCTTGCCTGCAATTTGCAGGAAATGACTATAATAGCATGCTCGTCAATGGCGGCGTAGTAGACAGTGGCCTGAGCGGTCTTCTCGTCAGAGGTGGTCACGATCCCGGGTCATCATTGTTAGGCAATAGGTCTAAAGCTGAGCGTGGCCAGGCCACTTTATTTCAGAAGCGAGCCATGGCCAGGCATTCCTCGCCAGCTCCATTGCTGCCTGACGAAGAGAGCCCCAACACCAGGGCATTGCCCAAGTCTCCCAAAGGAGACGGGGTCCGGGTCCAGATTTCGAATCCCGAGGAGGAAGGTGAAGAGCAATTGGCAGGAGAAGACAACATGGACGACGAGAGCGGAGGCGGTGGGTCAGGGTTGCTTTATGAAACCGACGACGCCAAACCGGAACAAGCCATGTCAGGTCAAGATGGCCCCGCCCCTGGCCCTGGCCCTCCAGCAGATAAAGGGAAAAGGAAGGGCTTGCCTGCAAAGAATCTCATGGCAGAGCGTAGGCGCAGAAAGAAGCTTAACGATCGCCTCTACATGCTTCGCTCAGTTGTTCCCAAGATTTCAAAGATGGACAGGGCATCGATTCTTGGCGATGCGATTGAGTACTTGAAGGAACTTCTGCAGCGTATAAATGATCTCCATACAGAACTGGAAGGGACTTCAGAGAGGCCACTGTCAGCTACTGCCCTGCCTCTACCTCTGAATCTGCCTGTTCCTTCTGCCTTCCATTATCCCTTGACTCCTTCCACGCCACCGCTTATCCCTTGCCGTATCAAGGAAGAATGTCCTCCCATTTCACTGCCTGCGCACTCAGAGGCATCAGATTCTCAGCCTGCAAGGGTAGAGGTAAAGACCAGAGATGGAAGGTCCCTCAACATTCACATGTTTTGTGCGAGAAGGCCCGGATTGTTGCTTTCCACGATGAGGGCATTGGATGAGCTTGGCCTTGATGTTCAACAGGCTGTTATTAGCTGCTTTAATGGATTTGCTTTGGACGTTTTCCGAGCAGAGCAGTCCAGAGGGGGAGGGATATTGCACTGGAGGAGATCAAAAGCCGTTCTTTTGCACACTGCAAACAGTCATCAGATAACAATGTAG___CTCAGTGGTTTGCCCCCCTCACCCCATCCCATAATTTGCAGAGAGTTGTATACTAGCCACTAACCATACTTTATCTAGGTATCCTCATACAACTTTATATACTTCTGCAACTAACAAAACTTTTCATGACCCCCTGCGTTTTCTACTACTGGCATATTCTGAGTATTGATGCCCATCAGGGAGAGTCTGCATTGTTGGTCTTATTTGTTTCTCTGTTGCCCATCATCATGAAACATGAGATCCTCATGTACAGTGGCTTATTATTATGTATTGCCCTCTCGAGATATTATAGAGAAAGATTAAATTTCAAAGCTTTTTCTTCCTGCGTTAGTCTTTGAATTTCAAACTCTGTTGTGTCATTATAGTGAATTACAGAATACTTTCGATTGTTGGTAGGTGGATTACAAGGCCCTGCCTCGTGTACTTGCTTGCAATATGCATCATTGCAATGTACAACATTCTCTAACAGAAAT

Fln Alignment:

sp_v1.1_unigene9668___MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHTELEGTSERPLSATALPLPLNLPVPSAFHYPLTPSTPPLIPCRIKEECPPISLPAHSEASDSQPARVEVKTRDGRSLNIHMFCARRPGLLLSTMRALDELGLDVQQAVISCFNGFALDVFRAEQSRGGGILHWRRSKAVLLHTANS
D5A934______________MAERRRRKKLNDRLFMLRSVVPKVSKMDRASILGDAVEYLKELLQRINDLHIELMAGSSNSK-------------------PLVPTMPDF-PYRMNQESQASLLNPEVE-----PATVEVSTREGKALNIHMFCSKKPGLLLSTMRALDELGLDVKQAIISCLNGFALDVFRAEQSMGGDVTA-EEIKALLLHTADN

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
678		80		20	0.995493
1046	75		25		0.996473
1050	75			25	0.996473
1051			25	75	0.996473
1052	25			75	0.996473
1060			75	25	0.996473
1061	75		25		0.996473
1065	25		75		0.996473
1066	75	25			0.996473
1068		25		75	0.996473
1069	25		75		0.996473
1240	83	16			0.994512
1241			16	83	0.994512
1242		83		16	0.994512
1243	83		16		0.994512
1245		16	83		0.994512
1246		16	83		0.994512
1247	83			16	0.994512
1248	83			16	0.994512
1250	83		16		0.994512
1251	83	16			0.994512
1259	16	83			0.994512
1741	87		12		0.992554
1746			87	12	0.992554
1749		12	87		0.992554
1750	87	12			0.992554
1751			87	12	0.992554
1758		12		87	0.992554
1760		12	87		0.992554
1761	12			87	0.992554
1873		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain