SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9644

Length: 1070 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9644

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	9.0e-23	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	tir nbs lrr disease resistance protein	-	-	3.23495e-31	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 779 aas, your sequence is shorter than subject: 262 - 1071

Fln protein: MQFAFLTANFPRISALFILMSNPLHSQPASMGWNIFSIISFCILQSAIAESFSAAFINHCGPDVKKTFASDIY*RLLSHGLKVFLD*PELQEGDDLSSQIKRLIHLASDHVVIFSGGYAK*A*CLNELVLMRESNASISLVFYNVKPCEVR*TQLKNEGFVQALRKLRWTPGKNRGYAQALQKLKNKRTYDHQSQSQEKKLQYDSNTFESWRFALYSVADMVGFELGKRITDTLQLRELEIEGPLSNLSNSIGRLSIYRGL*

Protein Length: 263

Fln nts: ATGGGGGCCGCAGAGCCCAGGAAATTATTTATTTTACTGGCTGGTAGGAATTCATGTGGTTCAAGGGTATAGTGTTTATAAATATTTTTGA_-_ATGCAGTTTGCATTTCTCACTGCAAATTTTCCCAGAATTTCTGCTCTTTTCATACTCATGAGTAATCCTCTCCACTCGCAACCTGCTTCAATGGGATGGAATATCTTTTCCATTATCTCCTTTTGTATTTTACAATCGGCAATCGCTGAATCCTTTTCAGCGGCTTTCATAAACCATTGTGGTCCAGATGTAAAGAAAACTTTCGCCAGCGATATTTACTAGCGCCTTCTTTCACATGGATTGAAAGTCTTTCTAGATTAGCCGGAATTGCAAGAGGGAGATGATTTGAGTTCACAGATTAAACGCCTTATTCATTTGGCTTCCGATCACGTTGTCATTTTCTCTGGAGGATATGCGAAGTAAGCTTGATGCCTAAATGAGCTTGTACTGATGCGAGAATCAAACGCCTCCATTAGTCTTGTTTTTTACAACGTGAAGCCTTGTGAAGTTCGGTAAACTCAACTGAAAAATGAAGGGTTTGTTCAAGCCCTAAGAAAACTTCGGTGGACGCCCGGCAAAAATAGAGGGTATGCTCAAGCCTTACAGAAATTGAAAAATAAGAGAACGTATGACCATCAATCTCAATCTCAAGAAAAGAAGTTGCAATACGACTCCAACACTTTTGAAAGTTGGAGGTTTGCTCTTTATAGCGTTGCAGACATGGTTGGTTTTGAGCTGGGAAAACGAATAACAGACACTTTACAGTTGCGGGAATTGGAGATTGAGGGCCCCCTCTCGAACCTTTCAAACTCGATAGGGAGGCTAAGCATCTATAGAGGATTGTGATTGGTCCTTTTCCGCTACATGGAAAGAAAGTCAAACTCAGAAAATTACCAGAAGAATTCTGTCGTCTGAGTCGTGAAAGGCCTTGATTTAAAACAATGTTCAGACATTATTTCACTGCCGCAGTGCTTTGGTAATTTAACCAACCTTTAACAGATTCAGCTGGCTCACTTCTCCCCTTCGGAGATGCTGCCAG

Fln Alignment:

sp_v1.1_unigene9644___NHCGPDVKKTFASDIY*RLLSHGLKVFLD*PELQEGDDLSSQIKRLIHLASDHVVIFSGGYAK*A*CLNELVLMRE---SNASISLVFYNVKPCEVR*TQLKNEGFVQALR----KLRWTPGKNRGYAQALQKLKNKRTYDHQSQSQEKKLQYDSNTFESWRFALYSVADMVGFELGKRITDTLQLRELEIEGPLSNL
C0PQE2______________NHRGPDVKNGLASHIYRRLIDHGLKVFLDKPEMQEGEPITPQIKRAIRTASVHIAIFSKGYADSTWCLDELLDMLDTVKSGSAILPVFYNVQPSDLRWTRGGDTVYARVLSIFLCILLCTRGENGVYARALRKLQKKTTLD--SVTNKKKPRHDSDTIEKWRKALSDVSLISGFELNACNGDERQLVDKVVQRVLEKV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
776	80		20		0.995493
777	40	20	40		1.0
778		40	60		1.0
779			80	20	0.995493
780	50			50	1.0
781	50		50		1.0
783	50			50	1.0
784	50	50			1.0
786	75			25	0.996473
788	50		50		1.0
894		80		20	0.995493
898	80		20		0.995493
900	80	20			0.995493
929	20	80			0.995493
934	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain