SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9642

Length: 1937 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9642

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein 70 (HSP70)-interacting protein, putative; K09561 STIP1 homology and U-box containing protein 1 [EC:6.3.2.19]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	ubiquitin-protein pub61	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	72%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	72%
Blast2go	response to salt stress	GO:0009651	Biological Process	72%
Blast2go	response to temperature stimulus	GO:0009266	Biological Process	72%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA55

Fln msg:

Fln protein: MAPGLDVPVNVAKQAELLKQDGNTYFKKDRLCAAIEAYTQAITLCPNVTVYWTNRALCHRKRDDWEKVESDCRKALELDVNSVKAHYMLGLALLQQKQYADGLKQLEKALELGRGANPSSYMVEEIWQELAKARYLEWESTSRLRLQKQQELRAICERALQHELESTSDNGFTASTQSDGRESNDLEGKSESCENSLKVESEITQKERMKLLSDVFDKAAEADIPNEVPEYLCCKITLDIFRDPVVTPSGVTYERAVILEHLRKVGNFDPITREPLKAEQLAPNLAVKEAVQDFLGKHGWAYKMI*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTTGGTGATGTTTGCGAAGATATAGGGAAAGGTTGGAGGGATGCGAGGCGCGGCATAGGACAAGACTAAAAATAGAGACAAGTGAACATGTCAAAGCTGAAGGCTGGAGAAAGAAGATCCTCGTTTGTTCCGTGATGGGCAAAACAAAGCCGGTATATAATTTGTTTGAACGAATTCATTCCACTCCCCAAACGAAAGCGTAAACGACGGGGATTCGAAAGGTCGGGAAACGACTCCGTCGTTGTGGATTGATTCATAGGATCAAGCAGAATT_-_ATGGCTCCAGGATTGGACGTTCCTGTGAACGTGGCAAAACAGGCGGAATTACTGAAGCAAGATGGCAATACTTACTTCAAGAAAGATCGTCTATGTGCAGCCATCGAGGCTTATACGCAGGCTATAACTCTATGCCCGAATGTTACCGTCTATTGGACTAACAGAGCTCTTTGCCATAGGAAACGCGACGATTGGGAAAAGGTCGAATCTGATTGCAGGAAAGCTTTAGAGCTCGACGTCAATTCTGTCAAGGCTCATTACATGTTAGGTCTTGCGTTGCTTCAGCAAAAGCAATATGCAGATGGTTTAAAACAGCTTGAAAAGGCTTTGGAGCTTGGGAGAGGGGCAAATCCATCAAGTTATATGGTGGAGGAGATCTGGCAGGAACTTGCAAAAGCAAGATATTTAGAGTGGGAGTCTACTTCACGCCTTCGTCTACAAAAACAACAAGAGTTAAGAGCAATTTGTGAAAGGGCTCTGCAGCACGAATTAGAAAGTACATCCGATAATGGGTTTACAGCAAGCACACAGAGTGATGGTAGAGAATCAAATGATTTGGAAGGAAAATCTGAAAGCTGTGAAAACTCTCTGAAAGTGGAGTCAGAAATTACTCAAAAGGAACGAATGAAATTACTCTCTGACGTGTTTGACAAAGCAGCGGAGGCAGATATCCCTAATGAGGTACCTGAATATCTGTGTTGCAAAATTACATTGGACATCTTTCGGGATCCAGTGGTAACTCCTAGTGGAGTTACATATGAGAGAGCAGTTATTTTGGAACATCTACGGAAGGTTGGCAACTTTGATCCAATTACACGGGAGCCACTTAAAGCTGAGCAATTGGCCCCGAATTTGGCTGTTAAGGAAGCTGTTCAAGACTTTTTAGGCAAGCATGGCTGGGCTTACAAAATGATATGA___AACAAAAACATCTGGAGACTTCCTTGTATAATAATGTTGACTTCTTTGGGAGCGTGAATCAGAGGTTTGGAGTTGGCGTTAAAAAATATGTTATGTTAGATGTTCTTCAACCAATCGAGTGGTATTATGATGTTTAAATTATATTGGTTTATTGATACACTGATATGGGTTCACCATCCGAGGTTTTGATTTTCATCACAAAGATGTAGATAATATCCATCAGCGGCTCCAGTCCGTCGTACAATAACGAATGAATTCTTTGATCCATATGTACAGCAGTTCGATAGGCAAGTAATCAATAGTCCCAATTTTTGGTCGAGCTCGGAGAGTAGCATTGAGCAGTCGTCAGCACATTATTTAATTTTAAAAACAATTGTCTGTAAGGCTGATTAAACTGGTCATTTATCAATTTATCGGGTTGGCATGCTTCAGGCTTGGAATATCCAATGCCCAAGTTATTTTCTTGGGTTTGGAGCGTTATCTATAATATATATGGTAATGAAATGGCAGTCGTTTCTTCTTTAATTATTTACTCTATTCCTACATCGTGGTGGGTTGGAATATGGAATTGCCACCCACATTTCCTGTTGTTGATGTGTGAGTCTAACGGGCTTTCAACGATGAAATACCTACTTTTGGAAAAAATGATAGACGTAGCTGCATTTGTTAAACAAGGCAATATGCGCGGCAGAATGGGAATGACATGCATGAATGCAATCCTTGCATATTA

Fln Alignment:

sp_v1.1_unigene9642___MAPGLDVPVNVAKQAELLKQDGNTYFKKDRLCAAIEAYTQAITLCPNVTVYWTNRALCHRKRDDWEKVESDCRKALELDVNSVKAHYMLGLALLQQKQYADGLKQLEKALELGRGANPSSYMVEEIWQELAKARYLEWESTSRLRLQKQQELRAICERALQHELESTS---------------DNGFTASTQSDGRESNDLEGKSESCENSLKVESEITQKERMKLLSDVFDKAAEADIPNEVPEYLCCKITLDIFRDPVVTPSGVTYERAVILEHLRKVGNFDPITREPLKAEQLAPNLAVKEAVQDFLGKHGWAYKM
D5AA55______________MAPGLDVPVNVAKQAEILKQDGNTYFKKDRLGAAIEAYTQAITLCPNVTVYWTNRALCHRKRDDWEKVEADCRKALELDVNSVKAHYMLGLALLQHKQYADGVKQLEKALELGRGANPSSYMVEEIWQELAKAKYLEWESTSRLRLQKQQELRAICERALQQELESTRMQDSETGIQPTTAPYHNGGTASTHNDGTESNDVEGESKSCENSLKVESEITYKERIKMLSDVFNKSAEADIPNEVPEYLCCKITLDIFRDPVITPSGVTYERAVILEHIRKVGNFDPITREPLKPEQLVPNLAIKEAVQDFLGKHGWAYKM

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
334		83	16		0.994512
416	80	20			0.995493
417	80		20		0.995493
419	20			80	0.995493
420		80	20		0.995493
426	20	80			0.995493
428	20	80			0.995493
430	80		20		0.995493
431	80	20			0.995493
432		20		80	0.995493
538	20		80		0.995493
540		80	20		0.995493
541	80		20		0.995493
592		20	80		0.995493
758			87	12	0.992554
805			83	16	0.994512
878		85	14		0.993533
879			14	85	0.993533
883	85			14	0.993533
884	85	14			0.993533
886		14	85		0.993533
888		14	85		0.993533
1263	33		66		1.0
1301		12		87	0.992554
1304		12	87		0.992554
1332		20		80	0.999996
1333	80		20		0.999996
1335		20		80	0.999996
1336	80		20		0.999996
1340		20		80	0.999996
1341		20	80		0.999996
1344			20	80	0.999996
1345	80		20		0.999996
1346	80	20			0.999996
1347	80			20	0.999996
1348			20	80	0.999996
1352	80	20			0.999996
1353	20			80	0.999996
1384	10	90			0.90298
1385	90	10			0.90298
1388	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain