SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9620

Length: 949 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9620

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to membrane-associated zinc metalloprotease, putative isoform 2 n=1 Tax=Vitis vinifera RepID=UPI0001984455	-	-	1.0e-26	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	membrane-associated zinc	-	-	4.74102e-36	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast organization	GO:0009658	Biological Process	4.74102e-36	91%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	4.74102e-36	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase M50	IPR008915	-	4.74102e-36	91%

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
407	47	52			1.0
456	5		84	10	0.999846
613		87	12		0.992554
614		87		12	0.992554
615	85		14		0.993533
616	14			85	0.993533
617		14		85	0.993533
621	20		20	60	0.99255
622			20	80	0.995493
623	80	20			0.995493
625		80	20		0.995493
628	33			66	0.997452
629		33		66	0.997452
631		33		66	0.997452
632	33			66	0.997452
690	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain