SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9616

Length: 2151 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9616
TGTATCGACCTTGGCTGTCACTCATTTAAGTCTTGCTGGTGCTTCTTCAAGGGCCTGTAAATATGTGTTGAATACCCTCATGCAGACATTCCAAATAAAGAAACTTGCTCATGGAGTAAAGGAAGGTACTCTTAACGTTCTTATTACTGAGCTTCTCCTCTGGTTGCTCGATGAAAGGGTTCCACTAATGGATGATGGTAGCCAACTACTGAAAGCTCTAAATGTTTTGATGCTGAAAATCTTGGAAAATGCCGAGCGAACATCGGCTTTTGCAGTTCTAATTTATCTGTTGCGGCCGCTAGATCCATCCAGGTGGCCATCTCCAGCATCTGAGGATGTTTTTGTAGCCAGAAGTCAGAAATTCTCTGATCTTGTTGTAAAATGTCTAATCAAACTTACAAAAGTTCTTCAAAATACCATCTTTGAGGTTGATCTTGATCGCCTTCTTCAGAGCATACACGTATATTTGCAGGAACTTGGAATGGAAGAAATTCGTCGAAGAGCTGGAGCTGATGATAAACCACTACGTATGGTCAAGACTGTATTACACGAGTTAGTCAAGCTCCGTGGAACTGCAATCAAAGGCCATCTTTCGATGGTTCCGATTGACTTGGAACCCCAGCCTATCATTCTTGCCTATATTGATCTAAATCTTCAGACTTTGGCAGCGGCTAGAATGCTGGCTCCATCTGGAGCAGTTGGTCAAAGTCACTGGGGAGACTCTGGTGCAAATAGTGCATCCCCTGCAGTGCATTCTGCAGATGCACAATTGAAGCAACGAGCTTGGTGCAGTTTCCAAAAAGATTGGAGATAAACAAACATGTACAATAGGTTTATATGAACTGTACCGCATCACACAATTATATCCACAGGTAGACATATTTTCTCAACTCCAAAATGCAAGTGAAGCATTTCGCACGTACATCAGAGATGGCCTAGCACAGATGGAAAAAAAATGCAGCTGCTGGTAGAACACCTTCAAGTGTACCTATATCAACACCACCTCCAGTATCTCCTAGTTTGTCTTCTCCAAAGCTTGCACCTCCATCCCCTCTAAATGCAAAATTACAGATAAATAAGCTAGAAAACATAATTCCCAACATCCGAGGATGTCCCGAGAATGCTGATGGCAATGGAGGACCGACATCAGTGGCTACTGATCAATTTGATTCCAGAAAGCTTTCCCACATGCGAACTCGAGATGAAAGAGACGAAAACAATGTTGTTTCAGGAGGTGAAACAAAATCAAACAATGTGGCACCACTCGGGACACTGGATGCAATTAGAGAGAGAATGAAGAGTATACAGGCAGCTGCTGCTGCTGGAAATATTGAAAGTGTGCCATTGATGTCTTATTCAAATGGTTCTCTCCCAGCCTTCTCTCGAAATTTCGCCTCTCAACCAGCAGAATCTCTTTGCCCAGAAATGCTCCCTCAATCTGGTGGTGTTCCTGCCATGGATGAAAAAGCATTATCTGGGTTACAAGCGCGAGTCGAAAGGTTGAAGTATGGGGTAATTGAACCATTGTAATAGCCAGCTGGTATGGAATCATTTTTCCTTTGGATTTGCATATACTCAGAATGCAAAACATAGACTTTCATCTGACAGGTTTTGAGCAGCAATATGCATGTTCGGAAAGTTTCTTGTAAGAGTGTTTTCAAATATTTTGAAGCTGCACTATGGTTCCTGAGCTCATTTCTTTGCTTATGTATACATGTCACTTGAAGCCATGGTGCATTCAAAGGAATAGTGATGTAAATAGTAAGGTATCTAGTTTAGCTGCATTTATTTCATCGGGGAGGCACCAGCAATAGTGCTTTTTTGTAAGGTGAATAATTTGATAACCTTGTGTGCATATCATACATTCTGTAGGTGGAATCATCAATTTTCTTGTGTCTCTTAGAATTCATATGAAAAGCTCGGGACTCTGAGTTGAGTTTGGGGCAGCAGGTATCCATTTGGAAGCTTTGTATACAAGGATCACATTGAAATTTTTGGATGTCCGCATTATTTTAATTTTCAGGTCATTGGTTTCAGGTTTTTGCTATTCTTTTGCTCTGAAAATTTAAATTACGATCAGATTGAGAAAATCTTGATATTTTGTGGGAGGTTTCGATAATTATCGCTCTGCACAATGGTCTTTTGACGCTA

Ace file of the UniGene sp_v1.1_unigene9616

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	microtubule associated protein xmap215, putative	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	microtubule organization protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	83%
Blast2go	cell plate formation involved in plant-type cell wall biogenesis	GO:0009920	Biological Process	83%
Blast2go	microtubule binding	GO:0008017	Molecular Function	83%
Blast2go	microtubule	GO:0005874	Cellular Component	83%
Blast2go	preprophase band	GO:0009574	Cellular Component	83%
Blast2go	spindle	GO:0005819	Cellular Component	83%
Blast2go	cortical microtubule cytoskeleton	GO:0030981	Cellular Component	83%
Blast2go	phragmoplast	GO:0009524	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAA6

Fln msg: your sequence is longer than subject: 114 - 60

Fln protein: MRTRDERDENNVVSGGETKSNNVAPLGTLDAIRERMKSIQAAAAAGNIESVPLMSYSNGSLPAFSRNFASQPAESLCPEMLPQSGGVPAMDEKALSGLQARVERLKYGVIEPL*

Protein Length: 115

Fln nts: TGTATCGACCTTGGCTGTCACTCATTTAAGTCTTGCTGGTGCTTCTTCAAGGGCCTGTAAATATGTGTTGAATACCCTCATGCAGACATTCCAAATAAAGAAACTTGCTCATGGAGTAAAGGAAGGTACTCTTAACGTTCTTATTACTGAGCTTCTCCTCTGGTTGCTCGATGAAAGGGTTCCACTAATGGATGATGGTAGCCAACTACTGAAAGCTCTAAATGTTTTGATGCTGAAAATCTTGGAAAATGCCGAGCGAACATCGGCTTTTGCAGTTCTAATTTATCTGTTGCGGCCGCTAGATCCATCCAGGTGGCCATCTCCAGCATCTGAGGATGTTTTTGTAGCCAGAAGTCAGAAATTCTCTGATCTTGTTGTAAAATGTCTAATCAAACTTACAAAAGTTCTTCAAAATACCATCTTTGAGGTTGATCTTGATCGCCTTCTTCAGAGCATACACGTATATTTGCAGGAACTTGGAATGGAAGAAATTCGTCGAAGAGCTGGAGCTGATGATAAACCACTACGTATGGTCAAGACTGTATTACACGAGTTAGTCAAGCTCCGTGGAACTGCAATCAAAGGCCATCTTTCGATGGTTCCGATTGACTTGGAACCCCAGCCTATCATTCTTGCCTATATTGATCTAAATCTTCAGACTTTGGCAGCGGCTAGAATGCTGGCTCCATCTGGAGCAGTTGGTCAAAGTCACTGGGGAGACTCTGGTGCAAATAGTGCATCCCCTGCAGTGCATTCTGCAGATGCACAATTGAAGCAACGAGCTTGGTGCAGTTTCCAAAAAGATTGGAGATAAACAAACATGTACAATAGGTTTATATGAACTGTACCGCATCACACAATTATATCCACAGGTAGACATATTTTCTCAACTCCAAAATGCAAGTGAAGCATTTCGCACGTACATCAGAGATGGCCTAGCACAGATGGAAAAAAAATGCAGCTGCTGGTAGAACACCTTCAAGTGTACCTATATCAACACCACCTCCAGTATCTCCTAGTTTGTCTTCTCCAAAGCTTGCACCTCCATCCCCTCTAAATGCAAAATTACAGATAAATAAGCTAGAAAACATAATTCCCAACATCCGAGGATGTCCCGAGAATGCTGATGGCAATGGAGGACCGACATCAGTGGCTACTGATCAATTTGATTCCAGAAAGCTTTCCCAC_-_ATGCGAACTCGAGATGAAAGAGACGAAAACAATGTTGTTTCAGGAGGTGAAACAAAATCAAACAATGTGGCACCACTCGGGACACTGGATGCAATTAGAGAGAGAATGAAGAGTATACAGGCAGCTGCTGCTGCTGGAAATATTGAAAGTGTGCCATTGATGTCTTATTCAAATGGTTCTCTCCCAGCCTTCTCTCGAAATTTCGCCTCTCAACCAGCAGAATCTCTTTGCCCAGAAATGCTCCCTCAATCTGGTGGTGTTCCTGCCATGGATGAAAAAGCATTATCTGGGTTACAAGCGCGAGTCGAAAGGTTGAAGTATGGGGTAATTGAACCATTGTAA___TAGCCAGCTGGTATGGAATCATTTTTCCTTTGGATTTGCATATACTCAGAATGCAAAACATAGACTTTCATCTGACAGGTTTTGAGCAGCAATATGCATGTTCGGAAAGTTTCTTGTAAGAGTGTTTTCAAATATTTTGAAGCTGCACTATGGTTCCTGAGCTCATTTCTTTGCTTATGTATACATGTCACTTGAAGCCATGGTGCATTCAAAGGAATAGTGATGTAAATAGTAAGGTATCTAGTTTAGCTGCATTTATTTCATCGGGGAGGCACCAGCAATAGTGCTTTTTTGTAAGGTGAATAATTTGATAACCTTGTGTGCATATCATACATTCTGTAGGTGGAATCATCAATTTTCTTGTGTCTCTTAGAATTCATATGAAAAGCTCGGGACTCTGAGTTGAGTTTGGGGCAGCAGGTATCCATTTGGAAGCTTTGTATACAAGGATCACATTGAAATTTTTGGATGTCCGCATTATTTTAATTTTCAGGTCATTGGTTTCAGGTTTTTGCTATTCTTTTGCTCTGAAAATTTAAATTACGATCAGATTGAGAAAATCTTGATATTTTGTGGGAGGTTTCGATAATTATCGCTCTGCACAATGGTCTTTTGACGCTA

Fln Alignment:

sp_v1.1_unigene9616___MSYSNGSLPAFSRNFASQPAESLCPEMLPQSGGVPAMDEKALSGLQARVERLKYGVIEPL
D5AAA6______________MSYSNGSLPAFSRNFVSQPAESLCPEMLPQSGGVPAMDEKALSGLQARVERLKCGVIEPL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
699		40		10	1.0
1036		33		66	1.0
1618	10		90		0.90298
1826		11	88		0.923564
1827	11	88			0.923564
2019	16			16	0.988813

SSRs (tot: 1)

Start position	End position	Sequence	Length
1312	1324	GCT GCT GCT GCT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain