SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9606

Length: 1392 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9606

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; subsp. trichocarpa).	-	-	0.0	62%
Blast2go	atp binding	-	-	1.05161e-38	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	1.05161e-38	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: A9PCV2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 16 aas,

Fln protein: MSELDAQDPLRKEVQQLQMANEQLESMFPSFIEPSKAGNAIERVLALETELADALKANSTKKRQFQSSFVKQQADQAAMRQSFRDINELINDMLELKRKNSVLDDELKEMQRRYSQISLQFAEVEGERQQLVMTIKSMRAGKKS*

Protein Length: 146

Fln nts: ATGAAAATTTAGCTCCATTTCAACAAGAAAATGAGCTT_-_ATGTCTGAGCTTGATGCACAAGATCCCCTCCGGAAAGAGGTGCAGCAGTTGCAAATGGCAAATGAGCAACTAGAGAGCATGTTTCCCAGCTTTATAGAACCTTCAAAGGCGGGCAACGCCATAGAGAGAGTTCTTGCTTTGGAGACAGAACTGGCAGATGCATTGAAGGCAAATAGCACCAAAAAAAGACAGTTTCAAAGCTCTTTTGTGAAACAACAAGCAGATCAGGCAGCTATGCGTCAGAGCTTCAGAGACATAAATGAGTTGATTAATGATATGCTGGAATTGAAAAGGAAAAATTCGGTGCTCGATGATGAACTAAAGGAGATGCAACGTCGCTATTCTCAAATAAGCCTCCAGTTTGCAGAAGTAGAGGGAGAACGACAGCAACTAGTCATGACCATCAAGAGCATGCGGGCTGGCAAGAAATCATAG___GTTCATCACTTTATCCGTCAACTAACTGTCAGGATCAAGGGGCAATATTTCCTTGACTTTGATTTCTCCATTAGATTATATGATCATCTGCTTGAGCTTTGTTGATTGCATTATGTTCATTTATGGATCTTGTGCTCTAAGGAAAGCATGGGAGGCAGAGAGGGAGAAAGGATTAGCATTGTTGTCACGGTATATCCCATTTTGAGCAACCAAGAAGCTTTCAAGTTATATTTTTGGTTGCAGATGAAGTTAAGTCAACATAGATACATAGTTTGTACTCGTGAGCATTCTCTCATTTGTACCAAAGAGATAATTTGTTATGATGCTCAAGTTGGTTTTTTCCATTCGTACATATGAAGCAGGAACTGCACAGTTAGCACTCCAGTTCTCATAAAAGAAGCAACACAGAGCTGGTGTCAATTGGATTTATTGATTCTGCCTTGCTTGTCAAAGACCTAGTAAGCTTCAAGAGGAAACAACAAAGAGCCAGAGTCCTCAATTTGATTGGTTGATTCTGGCTTTGTTTATCGAAGACCTAATAGGCTCGAAGGATTTTAATCATCAGCAATGAAAAAAATTGTTCTTGTAATAGTGGAGTTCCCCACGGAAATTGGCTTACTTTGACAATCCAGGTTCTTCCTGTCATGGATTGTAATGAAGATATCTCTGAATGGACACTGCATTCCTTGTAAAAAAGGAAGCGTATATTATATGTGAATTGAGGCCCCTGCAATAAAGTATATATACTTCATTGAATCGAACTGCAAGAATGTACAAATGGTTGGGTTAGCTGCTACAAATCATGCATTAATGTGGAACTTGTATATTATGGAGGATGGATTTGTTGAATGTTAAATCATGTTAGCTGCCTTGTGCGTTTGATATTTATTGCACACTTTGTTTAAAGCGATTCTGTTGC

Fln Alignment:

sp_v1.1_unigene9606___QLQMANEQLESMFPSFIEPSKAGNAIERVLALETELADALKANSTKKRQFQSSFVKQQADQAAMRQSFRDINELINDMLELKRKNSVLDDELKEMQRRYSQISLQFAEVEGERQQLVMTIKSMRAGKKS
A9PCV2______________KLQKANEELGSMFPLFNEFSGSGNALERVLALEIELAEALQAKKRSSILFQSSFFKQHSDEEAVFKSFRDINELIKDMLELKGRYTTVETQLKEMHDRYSQLSLQFAEVEGERQKLTMTLKNVRASKKA

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
280			55	44	1.0
676		25		75	0.996473
677			25	75	0.996473
679		25		75	0.996473
681	75			25	0.996473
685	75	25			0.996473
687		75		25	0.996473
688	75			25	0.996473
689	75		25		0.996473
691	75	25			0.996473
692	75			25	0.996473
695	25			75	0.996473
696		25		75	0.996473
726		20		80	0.995493
727			20	80	0.995493
728	80			20	0.995493
729	80	20			0.995493
732		80	20		0.995493
734	80	20			0.995493
736	80			20	0.995493
738	80		20		0.995493
740	80	20			0.995493
742	80			20	0.995493
746	80	20			0.995493
747	20		80		0.995493
781	75			25	1.0
782	75		25		1.0
784	75	25			1.0
785			75	25	1.0
786	75		25		1.0
788	75	25			1.0
790		25		75	1.0
803	11			88	0.923564
804		88		11	0.923564
805	88		11		0.923564
806	88		11		0.923564
970		80	20		1.0
974	80	6	13		0.999961
976			13	86	0.999973
977	13			86	0.999973
978		13	86		0.999973
979	80	13	6		0.999961
984		14		78	0.999974
987	85			14	0.999981
988		21		78	1.0
989	14			85	0.999981
1117	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain