SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9604

Length: 2094 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9604
CGTCGTGACCTTGGCTGTCACTCAATCATATTACAATAACGTCGTGACCTTGGCTGTCACTCATTGTTTCTAACTTTTTTTATGAGGCAAAAGTCCCCTGTAATGTTAACTTTAACCTTGCACCCTTGAAACTGGTTCTTGTGGGTTTTTCATTTCACAGGTCGAATTCTGGTCCGAGTTCGAATCGAGTCGAGGCAATGGGGCAAGCGCATGGCGGTGGCCTGAATCGCAGGGGCTCCCCAGACGACCGCAGGCAGGACGACAAGAAGGAGAAGAAATTCGAACCCGCAGCACCACCAACTCGCGTGGGCCGTAAACAAAGAAAGCAGAAGGGACCCGAGGCGGCCGCCCGGTTGCCGGTGGTGACGCCACTGACCAAATGCAAGCTCCGGCTCTTAAAGCTTGAAAGGATTAAAGATTATCTTCTCATGGAGGAGGAGTTCGTCTCCAACCAGGAGCGGCTGAAACCCCAGGAGGACAAGAACGAGGAGGACAGGTCGAAGGTCGACGATCTGAGGGGATCTCCTATGAGCGTCGGTAATCTGGAGGAAATTATCGACGAAAATCACGCAATTGTTTCGTCTTCGGTCGGGCCTGAGTATTATGTCAATATTCTGTCGTTTGTAGATAAAGATCAGCTTGAGCCTGGATGCGCCATTCTCATGCACAATAAGGTCCTATCTGTCGTTGGACTCTTGCAGGATGAAGTTGATCCAATGGTATCTGTCATGAAAGTGGAGAAGGCACCATTGGAGTCATATGCTGATATCGGAGGTTTAGATGCTCAAATTCAGGAGATAAAAGAAGCTGTTGAGCTTCCTCTTACGCATCCTGAACTGTATGAGGATATTGGTATCAAGCCTCCAAAAGGAGTCATTCTATATGGTGAGCCAGGAACAGGCAAAACACTACTGGCTAAGGCTGTTGCAAATTCAACGTCAGCAACATTTCTACGTGTTGTCGGAAGTGAGCTGATCCAGAAGTATTTGGGAGATGGACCAAAATTGGTGCGAGAGCTTTTTCGAGTGGCTGATGATCTTTCCCCATCAATTGTCTTCATTGACGAAATTGATGCTGTAGGCACTAAAAGGTATGATGCTCATTCTGGGGGTGAGCGAGAAATTCAGCGTACCATGTTAGAGCTGTTAAATCAACTGGATGGTTTTGATGCAAGAGGTGATGTTAAGGTTATCCTGGCAACCAATCGGATTGAGAGTTTAGACCCTGCTTTGCTACGGCCTGGTAGAATAGATAGAAAGATAGAATTTCCCCTTCCTGACATAAAAACAAGGAGACGCATATTCCAGATACATACAGCAAGGATGACACTCGCAGATGATGTTAATTTAGAAGAATTTGTAATGACAAAGGATGAGTTCTCCGGAGCAGATATCAAAGCTATTTGCACTGAAGCAGGGTTGCTTGCTTTGAGAGAAAGGCGTATGAAGGTAACACAAGTTGATTTTAAGAAAGCTAAGGAGAAAGTGATGTTTAAGAAGAAGGAAGGTGTTCCTGAAGGTCTATATATGTAATATTTTGGGACGCAAGGGAATCATTTTAAATGTGATGTTATCGTTTTGTGAATGAAAACAGCTGTTGTTCTCTTGTAGGCCTGTGTTCCTTGGCATCGAGGGTGCCAAATAACATGGTGCATTTACTATTCATGTGTGCCATAAAATGCGTCTATGTGCCCTATCATCTGGACATTTAAAAGAAAAATTCATATAATTTGTTATTTTGTGGCAGTTGTAGAAAAAATATGCCGTTTATTGATTTGGGGAAGAAATTTGATTCTGCGTTTCAACGGTCAACTAAAAACTGCAAGCTGCCTAGTTCCCAGGACAGTTCTAGTGCCAAAAACACCAGTTTAACCCAAAGCTTGACGACTTACAGTTTGTATTTTATTCAAGAAATCCATACTCGGTTAACTAAAGGTAACTTATTTAAAGTTCTCTGAATGTCATCTTGGGGATAATTTCTTTGAGGTGATTTCCTCAAGTATATTTTGTTATTTTATTGGAAGGTAAATAACCCAAAACCGCATCTTCTGATTCATGGAGTGATATATAATTACTAACTGCAGGTTGAACTAAG

Ace file of the UniGene sp_v1.1_unigene9604

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit 4 homolog A n=17 Tax=Embryophyta RepID=PRS4A_ARATH	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	proteasomal ubiquitin-dependent protein catabolic process	GO:0043161	Biological Process	95%
Blast2go	response to misfolded protein	GO:0051788	Biological Process	95%
Blast2go	meristem structural organization	GO:0009933	Biological Process	95%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	95%
Blast2go	proteasome core complex assembly	GO:0080129	Biological Process	95%
Blast2go	response to heat	GO:0009408	Biological Process	95%
Blast2go	root cap development	GO:0048829	Biological Process	95%
Blast2go	meristem growth	GO:0035266	Biological Process	95%
Blast2go	maintenance of root meristem identity	GO:0010078	Biological Process	95%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	95%
Blast2go	ATPase activity	GO:0016887	Molecular Function	95%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	95%
Blast2go	ATPase, AAA-type, core	IPR003959	-	95%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	95%
Blast2go	26S proteasome subunit P45	IPR005937	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKT7

Fln msg:

Fln protein: MGQAHGGGLNRRGSPDDRRQDDKKEKKFEPAAPPTRVGRKQRKQKGPEAAARLPVVTPLTKCKLRLLKLERIKDYLLMEEEFVSNQERLKPQEDKNEEDRSKVDDLRGSPMSVGNLEEIIDENHAIVSSSVGPEYYVNILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDARGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTARMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTQVDFKKAKEKVMFKKKEGVPEGLYM*

Protein Length: 446

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATATTACAATAACGTCGTGACCTTGGCTGTCACTCATTGTTTCTAACTTTTTTTATGAGGCAAAAGTCCCCTGTAATGTTAACTTTAACCTTGCACCCTTGAAACTGGTTCTTGTGGGTTTTTCATTTCACAGGTCGAATTCTGGTCCGAGTTCGAATCGAGTCGAGGCA_-_ATGGGGCAAGCGCATGGCGGTGGCCTGAATCGCAGGGGCTCCCCAGACGACCGCAGGCAGGACGACAAGAAGGAGAAGAAATTCGAACCCGCAGCACCACCAACTCGCGTGGGCCGTAAACAAAGAAAGCAGAAGGGACCCGAGGCGGCCGCCCGGTTGCCGGTGGTGACGCCACTGACCAAATGCAAGCTCCGGCTCTTAAAGCTTGAAAGGATTAAAGATTATCTTCTCATGGAGGAGGAGTTCGTCTCCAACCAGGAGCGGCTGAAACCCCAGGAGGACAAGAACGAGGAGGACAGGTCGAAGGTCGACGATCTGAGGGGATCTCCTATGAGCGTCGGTAATCTGGAGGAAATTATCGACGAAAATCACGCAATTGTTTCGTCTTCGGTCGGGCCTGAGTATTATGTCAATATTCTGTCGTTTGTAGATAAAGATCAGCTTGAGCCTGGATGCGCCATTCTCATGCACAATAAGGTCCTATCTGTCGTTGGACTCTTGCAGGATGAAGTTGATCCAATGGTATCTGTCATGAAAGTGGAGAAGGCACCATTGGAGTCATATGCTGATATCGGAGGTTTAGATGCTCAAATTCAGGAGATAAAAGAAGCTGTTGAGCTTCCTCTTACGCATCCTGAACTGTATGAGGATATTGGTATCAAGCCTCCAAAAGGAGTCATTCTATATGGTGAGCCAGGAACAGGCAAAACACTACTGGCTAAGGCTGTTGCAAATTCAACGTCAGCAACATTTCTACGTGTTGTCGGAAGTGAGCTGATCCAGAAGTATTTGGGAGATGGACCAAAATTGGTGCGAGAGCTTTTTCGAGTGGCTGATGATCTTTCCCCATCAATTGTCTTCATTGACGAAATTGATGCTGTAGGCACTAAAAGGTATGATGCTCATTCTGGGGGTGAGCGAGAAATTCAGCGTACCATGTTAGAGCTGTTAAATCAACTGGATGGTTTTGATGCAAGAGGTGATGTTAAGGTTATCCTGGCAACCAATCGGATTGAGAGTTTAGACCCTGCTTTGCTACGGCCTGGTAGAATAGATAGAAAGATAGAATTTCCCCTTCCTGACATAAAAACAAGGAGACGCATATTCCAGATACATACAGCAAGGATGACACTCGCAGATGATGTTAATTTAGAAGAATTTGTAATGACAAAGGATGAGTTCTCCGGAGCAGATATCAAAGCTATTTGCACTGAAGCAGGGTTGCTTGCTTTGAGAGAAAGGCGTATGAAGGTAACACAAGTTGATTTTAAGAAAGCTAAGGAGAAAGTGATGTTTAAGAAGAAGGAAGGTGTTCCTGAAGGTCTATATATGTAA___TATTTTGGGACGCAAGGGAATCATTTTAAATGTGATGTTATCGTTTTGTGAATGAAAACAGCTGTTGTTCTCTTGTAGGCCTGTGTTCCTTGGCATCGAGGGTGCCAAATAACATGGTGCATTTACTATTCATGTGTGCCATAAAATGCGTCTATGTGCCCTATCATCTGGACATTTAAAAGAAAAATTCATATAATTTGTTATTTTGTGGCAGTTGTAGAAAAAATATGCCGTTTATTGATTTGGGGAAGAAATTTGATTCTGCGTTTCAACGGTCAACTAAAAACTGCAAGCTGCCTAGTTCCCAGGACAGTTCTAGTGCCAAAAACACCAGTTTAACCCAAAGCTTGACGACTTACAGTTTGTATTTTATTCAAGAAATCCATACTCGGTTAACTAAAGGTAACTTATTTAAAGTTCTCTGAATGTCATCTTGGGGATAATTTCTTTGAGGTGATTTCCTCAAGTATATTTTGTTATTTTATTGGAAGGTAAATAACCCAAAACCGCATCTTCTGATTCATGGAGTGATATATAATTACTAACTGCAGGTTGAACTAAG

Fln Alignment:

sp_v1.1_unigene9604___MGQAHGGGLNRRGSPXXXXXXXXXXXXXXXXXXXTRVGRKQRKQKGPEAAARLPVVTPLTKCKLRLLKLERIKDYLLMEEEFVSNQERLKPQEDKNEEDRSKVDDLRGSPMSVGNLEEIIDENHAIVSSSVGPEYYVNILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDARGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTARMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTQVDFXXXXXXXXXXXXEGVPEGLYM
B8LKT7______________MGQAHGGGLNRKGSPDDRKQDDKKEKKFEPAAPPTRVGRRQRKQKGPEAAARLPVVTPLTKCKLRLLKLERIKDYLLMEEEFVSNQERLKPQEDKNEEDRSKVDDLRGSPMSVGNLEEIIDENHAIVSSSVGPEYYVNILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDARGDVKVILATNRIDSLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTARMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTQIDFKKAKEKVMFKKKEGVPEGLYM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
99		85		14	0.993533
1718	80			6	0.999961

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain