SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9589

Length: 1876 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9589

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U1 small nuclear ribonucleoprotein C, putative n=1 Tax=Ricinus communis RepID=B9S3X9_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	c-type u1 snrnp	-	-	63%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, C2H2-type matrin	IPR000690	-	63%
Blast2go	Zinc finger, U1-type	IPR003604	-	63%
Blast2go	Zinc finger, U1-C type	IPR013085	-	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7U4

Fln msg: your sequence is longer than subject: 284 - 244

Fln protein: MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRAYYQQFEEQQTQSLIDQRVKEHLGQTAAFQQQVGAALHHHLASMQAGQQRPRIPMLQPPTLPVPGSTQVPNGLSMLPTVRPPVLMRPPIILPGYGVSMGTSPMIRPPGAAVTSPPGVAQSNGLPRPPTLTPPVFTGVTASAATSSPMSNVLTSNPPISGPSGMYQSQEPNSIPTSGAYGTY*YNYAADLASFSEQIISVIPPNLSYGTQATQSIFSSSLLCSFYSNTTFSCSSRDMYSFYQVPISISQ*

Protein Length: 285

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTCCTGCCAGATTCCGGCACTGAAAACTTAAAAAAAGACAACTCTAGTTTAGAACAAAATCCCCTTGCTAATAAGTTCGTTAAACTAAACCAGAACGAAATTATCGCCCAGTTATATGGTGTTTATGGGTGGTTATCTTGGCTGTGATTTCATGCTTTTTTTGCAGTTTCTGTTACATTTGCTGTCACTGTATATTTTACGTCTTTGGTGCTAATCTGGCTATATATTCAGCCGAAGTTGCAGACGTTATGGACAAAACAAATGTGCAAAGCTGAACTTCGTCTAGACTTATTTGCGTGAAATTAGTTGGCAGTCCGTTTTCTCAAATTTCTCAATGCTATATGTGTTATTATACACAAATAGCGGATTCCGAGTCTTTCATTTAAATTTTTAGACTTATCTTCCATTGGTCTTATGCTGAATCAAACTGGTTTTGGGCGACGGGAAATATTCGAAAATTGCCAATTGGAGGTATCTCAAACCCGACGTTAGCTTGGCGTAACC_-_ATGCCTCGGTATTATTGCGACTATTGCGATACTTATTTAACTCACGACTCGCCCTCAGTCAGAAAGCAGCATAATGCAGGGTACAAGCACAAGGCAAATGTTCGGGCATATTATCAACAATTTGAAGAGCAGCAAACTCAAAGTTTGATAGATCAGAGGGTCAAGGAACATCTTGGTCAGACAGCAGCTTTCCAGCAGCAAGTTGGTGCCGCCCTCCATCATCATCTTGCTTCTATGCAGGCTGGGCAACAGAGGCCTCGTATTCCAATGTTACAACCACCTACTTTGCCTGTACCGGGATCTACACAGGTACCGAATGGCCTGTCAATGTTACCTACTGTTCGTCCCCCTGTCCTAATGCGACCTCCAATAATTCTTCCAGGCTATGGTGTATCTATGGGGACATCTCCAATGATTAGACCTCCTGGGGCAGCAGTTACTTCACCTCCAGGTGTAGCACAGTCCAATGGGTTGCCAAGGCCACCTACCCTGACTCCCCCAGTTTTCACAGGGGTAACAGCATCTGCAGCCACATCATCACCAATGTCAAATGTCCTTACATCTAATCCACCTATTTCTGGTCCTTCTGGTATGTATCAAAGTCAAGAACCAAATTCTATTCCTACAAGTGGAGCTTATGGAACGTACTGATACAACTATGCAGCAGACCTAGCTAGTTTTTCTGAACAGATTATATCAGTGATCCCCCCAAATCTGTCCTATGGAACTCAAGCCACCCAGAGTATCTTCTCTTCCAGCTTATTATGCTCATTCTACTCCAACACCACCTTCAGCTGCAGCTCCAGAGATATGTATAGTTTCTACCAAGTTCCTATATCCATATCCCAGTAA___TCAATCTGCTACTAATATGAGTGTGACCTCGTATGGAAAACTTGCAGGATAATGAAGCGGAAGGTTACATTTATGATTGTGGCTAAGTAAGATTTTATTTGTACTTTTGTTCTGCTATGCTTAGGTTTTGAATCTATTTTCTCTCCTGTTAACTTAATGTTAAGCAAGCAGCGAAAGTCTTTTTTAGCATAGATTATCTCAATTCTATTTTGACTGTTTAACAAGAGCTTTAGATACTGCAATAGATTCATAGAATCCAAAGGTAACAGGATTATCCTATGGAAGAGGAGTGGATAAATCTCTACTGAATTCAAGGTGATGATTTAATGGTTGGTTGCTTTTATTTCCTCATTTGCATTCCAAATAGCCAGTGAAACACTTTTTTCTCTAAAGAGCAAGGCTTATAAGGTTCCTTTGTACAGTAATCAAGGTATAAGGTGTTTCAATTATGTTTGTGAACTTTTGTCAGGGGAACAATATTAAGCTGAAAC

Fln Alignment:

sp_v1.1_unigene9589___MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRAYYQQFEEQQTQSLIDQRVKEHLGQTAAFQQQVGAALHHHLASMQAGQQRPRIPMLQPPTLPVPGSTQVPNGLSMLPTVRPPVLMRPPIILPGYGVSMGTSPMIRPPGAAVTSPPGVAQSNGLPRPPTLTPPVFTGVTASAATSSPMSNVLTSNPPISGPSGMYQSQEPNSIPTSXXXXXXXXXXXXDLASFSEQIISVIPPNLSYGTQAT
D5A7U4______________MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRAYYQQFEEQQTQSLIDQRVKEHLGQTAAFQQQVGAAFQQHLASMQAGQQRPRIPMLPPPTLPVPGSTQLPNGLSMLPTLRPPILTRPTLIPPGYGVSVGTSPMIRPPGAAVTSPPGVAQSNGWPRPPTLTPPVSTGVTASTATSSPMSNVLMSNPPISGPSGTYQNQQQNSIPTSGAYGTYNYAAAP--ASLSQQSTSVTPPNPTYGTQTS

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
309	12	87			0.992554
311			12	87	0.992554
312		87	12		0.992554
314			12	87	0.992554
344	88	11			0.923564
351			11	88	0.923564
352	11			88	0.923564
353		11		88	0.923564
356		88		11	0.923564
357	88		11		0.923564
358	88		11		0.923564
359	88	11			0.923564
362	11			88	0.923564
388	81			18	0.999994
390	81			18	0.999994
391	81		18		0.999994
393		18		81	0.999994
394	81	18			0.999994
395			81	18	0.999994
396		81		18	0.999994
399	81	18			0.999994
401			18	81	0.999994
402		81		18	0.999994
406		18	81		0.999994
409	10			90	0.90298
529	10		90		0.90298
536		90		10	0.90298
552		18		81	0.999994
761		10		90	0.90298
785	88			11	0.923564
802	10	90			0.90298
842	85		14		0.993533
846			85	14	0.993533
847			14	85	0.993533
849		85	14		0.993533
850		87		12	0.992554
852	87	12			0.992554
853	75	12	12		0.975346
854	12			87	0.992554
856	12		87		0.992554
862		85	14		0.993533
863	85		14		0.993533
864	83	16			0.994512
868		16		83	0.994512
872	16			83	0.994512
933	87		12		0.992554
934			12	87	0.992554
966	12		87		0.992554
1038	11		88		0.923564
1041			11	88	0.923564
1042			11	88	0.923564
1231		18		81	0.999994
1486			11	77	0.999842
1487		11		88	0.999937
1723		11		88	0.923564
1724		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain