SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9584

Length: 1211 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9584

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	VAMP-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TZJ4_PHYPA	-	-	3.0e-24	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	vamp-like protein	-	-	6.03782e-24	47%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	6.03782e-24	47%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Synaptobrevin	IPR001388	-	6.03782e-24	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2K7

Fln msg: your sequence is shorter than subject: 194 - 219

Fln protein: VFLEHVRDEFKKLLKNRGCEGLSSCCFDKEFGPVYKRLVAPLVGVPQIEKDRLTEEESKSQPAKTHPVQVNSSPKDSLPVYDNTQIQDLNHEPLLGHGKKKKKDQATEVIDIIRENGSKALDTSNGLEVIVDGNCPGGLSLEKSASFRNKGQQLAQRMWWRNVRLVLIIDVVVCTILFGVWLGVCSGFQCISR*

Protein Length: 195

Fln nts: TTGTATTTCTTGAGCATGTCAGAGATGAGTTCAAGAAATTGTTGAAGAACAGAGGTTGTGAAGGGCTCAGTTCGTGCTGTTTTGATAAAGAATTCGGTCCTGTTTACAAGCGCCTTGTGGCTCCTCTTGTCGGTGTTCCTCAAATAGAAAAGGATCGCTTGACGGAGGAAGAATCGAAATCCCAACCTGCTAAAACGCATCCAGTCCAGGTAAATAGTTCTCCCAAAGATTCTCTACCTGTGTATGATAATACCCAAATTCAGGATTTGAATCACGAGCCCCTGTTGGGCCATGGAAAGAAGAAAAAGAAGGATCAGGCCACTGAGGTCATTGATATTATCCGGGAGAATGGCAGCAAAGCACTGGATACGAGCAATGGGCTCGAGGTAATTGTCGATGGTAACTGCCCAGGTGGGTTGTCATTGGAGAAGAGTGCTAGCTTCAGGAATAAAGGGCAGCAGCTTGCTCAGAGAATGTGGTGGCGTAATGTCAGGCTGGTGTTGATTATAGATGTGGTAGTTTGCACAATTCTATTTGGGGTTTGGCTAGGCGTCTGCAGTGGATTTCAATGCATTTCCCGATGA___GGGGTTATTGAAGTTGAGCCGAGGAAATCAGAATGGTGAAGGCTTGCTTATGAAGACCAAGAGCTTGAAGATGAGAGAAAAATGGCCCTTTCCCCACCTTCTCAAATTTCGTCGTGACCTTGGCTGTCACTCATCTTTTTGAAATACCTATGATGGAGTTTGATGTCCTAAGATTATAGGGCTGCTTTGATTCTCTTTCAAGCTCTGAGGCCTTCTGGTTCTGTCTTCATACAAAATTAGACGGGCTTCTATTCAAATTTTCTTTCTAGTTTCCTACAGGAGCATTTTATGTATACATAGACATGTTGTGGTATAACGCCAATGCAATGCGTTCTGTGTGATTTTTATTGGAGAAAGCAATGTATCTGACAATTTAGATCGCTTCTAAGACATAAGTTTCAACCATAGTAAAATAATACAGTGGAAATCGCTGGCTTTAGAGGGAGTGCCGATGAACTTATCAGATAATTCGACGGGGATTGACGTCTTTGGATATTTTAAATAGCAAGTTTCAAAGAGAAAAGGATCCCTCCTCTTCTATTGGCTGGTCCAGCATTTCAGGTGCATGAAATATTATGTATTTGCAGTTTCTGTGAGTTACAGTACTCTGGTGTTGTACATCCTTTC

Fln Alignment:

sp_v1.1_unigene9584___VPQIEKDRLTEEESKSQPAKTHPVQVNSSPKDSLPVYDNTQIQDLNHEPLLGHGKKKKKDQATEVIDIIRENGSKALDTSNGLEVIVDGNCPGGLSLEKSASFRNKGQQLAQRMWWRNVRLVLIIDVVVCTILFGVWLGVCSGFQC
A9P2K7______________VPFLFLERVKEDFKRRYGGRAETSMAHSLDKDYGPILRDHMQYCMDHPEELSKFSKIKA-QVSEVKGIMMDNIEKVLDRGEKIELLVDKT--EGLQFQAD-NFQRQGRQLRRKMWLQNLKFKIIVLGTVLSIILIIWLSVCKGFSC

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
179	66	33			1.0
180	66		33		1.0
183		66	33		1.0
184		66		33	1.0
185	66		33		1.0
190			66	33	1.0
191		66	33		1.0
192			33	66	1.0
193	66	33			1.0
194	66			33	1.0
195	66		33		1.0
196	66			33	1.0
198	33		66		1.0
203	33	66			1.0
498		66		33	0.997452
638		33		66	0.997452
682		33		66	0.997452
701	75	25			0.996473
703		75		25	0.996473
705		75	25		0.996473
710		25		75	0.996473
713	75		25		0.996473
716		75		25	0.996473
717	75		25		0.996473
718	75			25	0.996473
779		10		90	0.90298
783	10			90	0.90298
788		10		90	0.90298
791	88	11			0.923564
792	88			11	0.923564
794		88		11	0.923564
795	11			88	0.923564
798		11	88		0.923564
825	89			10	0.999919
827	84		10		0.999846
1141		87		12	0.992554
1144	12		87		0.992554
1145		87	12		0.992554
1147		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain