SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9574

Length: 1508 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9574

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DCP1; DCP1 (decapping 1); m7G(5')pppN diphosphatase/ protein homodimerization	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	mrna decapping enzyme	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.6.1.3-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	deadenylation-independent decapping of nuclear-transcribed mRNA	GO:0031087	Biological Process	67%
Blast2go	m7G(5')pppN diphosphatase activity	GO:0050072	Molecular Function	67%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	67%
Blast2go	cytoplasmic mRNA processing body	GO:0000932	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Dcp1-like decapping	IPR010334	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS3

Fln msg:

Fln protein: MSQNGKLMPQLDQQSTKLLNLTVLKRIDPCVEDILFTAAHVTFYEFNTEQSQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYERRDCEDIANLFNRILSAFSKVPPKPKTFTPKSTEFQELERVPTSAIMEGPLEPTEAALPNVTELSEEPYECFFNGPLHTNNPSNLTSSAPMRPLTSTHSLPSRSFPSSAPSPPTSILTPPIAVPSVSVSSMDGSEAGINRLVKPSFFVPPLVSPALMAPPISSTPTAPPVQPPSQLQPSHGSPLLQPFPPPTPPPSLAPASSMSHGPIITRDGIRDALVKLIQNEHFIDMVYREMMNAHLS*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGGTTCTCTACATAGACACATGACAATGGCTTGCTCCCAATACATTGAGTCCATATGAGGGATTCGATCTGACGACCTTCCGGTGAAATGATGATACGAAAACCAACAAAATTCCATCTGTATATAACCCTGGGAGGTATACAGCTCATTCTTCGGAGGATTTACGATTAGGCCCGAAGGCGCTTCTGAGAAAAGCCATCAGCCTGATACAATAAGGGAGTGTGGCCTTCCAAAGGGCCAGATAATAATAAGGAACCCCG_-_ATGTCGCAGAACGGGAAACTGATGCCACAACTGGACCAGCAGAGCACCAAGCTCCTCAACCTCACCGTGCTTAAGCGGATCGATCCCTGTGTCGAAGACATCCTCTTCACAGCCGCTCATGTTACATTTTACGAATTCAATACCGAACAAAGCCAATGGAGTCGCAAAGATGTCGAGGGATCGCTCTTCGTGGTCAAGAGGAATACACAGCCACGTTTCCAGTTTATTGTCATGAATAGGCGTAATACTGAGAACTTGGTTGAGAATCTGCTTGGTGATTTTGAATACGAAGTCCAAGTTCCATATTTGCTTTATCGAAATGCAGCTCAGGAAGTGAATGGAATTTGGTTTTATGAACGACGTGATTGTGAAGATATTGCAAATCTTTTCAACAGGATATTGAGTGCATTCTCCAAAGTTCCTCCAAAGCCAAAAACATTCACACCGAAAAGCACCGAGTTTCAAGAGCTGGAAAGAGTCCCAACTTCAGCAATAATGGAGGGTCCTCTGGAGCCTACTGAAGCTGCTCTACCAAATGTCACAGAGCTGTCTGAAGAACCCTATGAATGCTTTTTTAATGGACCTTTGCACACAAACAATCCTTCAAATTTGACATCGTCAGCACCTATGCGGCCATTAACATCAACACACTCCTTACCAAGTCGTTCATTTCCAAGTTCAGCACCATCTCCACCAACGTCAATACTCACTCCCCCAATAGCTGTGCCATCTGTGTCAGTAAGTTCCATGGATGGCTCAGAAGCTGGCATCAATCGCCTGGTCAAACCTTCTTTCTTTGTACCACCATTGGTATCTCCAGCATTAATGGCTCCACCCATTTCTTCCACACCGACAGCCCCACCTGTTCAACCACCCTCACAACTGCAGCCTTCACATGGTTCACCCCTTCTTCAACCTTTTCCCCCTCCTACTCCGCCCCCATCTCTTGCTCCAGCTTCAAGCATGAGTCATGGACCAATTATAACAAGAGATGGTATCCGTGATGCTCTAGTTAAATTAATCCAGAATGAACATTTCATTGACATGGTGTATCGGGAAATGATGAATGCTCACCTTTCATGA___AGATGCTTGGGAAAATGCTTTTTGTAGCGTTTCTGTTTGTAAACACACTTTTCTTGTGTAATTTTTAGATGTATCCATTTTCTTCGATGATGGTTTTGTGTACAAGATTTCTGTAGTATATTGTTGTACCAGACAACCATCT

Fln Alignment:

sp_v1.1_unigene9574___MSQNGKLMPQLDQQSTKLLNLTVLKRIDPCVEDILFTAAHVTFYEFNTEQSQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYERRDCEDIANLFNRILSAXXXXXXXXXXXXXXXXEFQELERVPTSAIMEGPLEPTEAALPNVTELSEEPYECFFNGPLHTNNPSNLTSSAPMRPLTSTH------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDGSEAGIN---RLVKPSFFVPPLVSPALMXXXXXXXXXXXXXXXXXXXXXXHGXXXXXXXXXXXXXXXXXXXXXXXHGPIITRDGIRDALVKLIQNEHFIDMVYREMMNA
B8LQS3______________MSQNGKIIPQLSQQVTNDSNLTVLQRIDCHVEEILATAGHVTLYDFNMELSQWSRKDVEGPLFVVKRRTQPRFQFIVMNRRSAENLVEDLLSDFEYEINLPYLLYRNANQEVIGIWFYDPRECDEVVKLFSRILNAFSKVPPKPKVFTNQSNEFQELESVPTSATIEGPLEP-PSSTSAITEASEEPLERFFSASLHLSNRPELSSLTSVRSSTMTHPLPARSTSVSSTTLTPMSVSSPPLPASSVSLVHMAARPLDVTEVSSSSHATLVKPSFFVPQPSLSTSMPLSLSNAPMAPPLNPLPPLQPSYGAPLLQPFPPPAPSQSLAPASTVSQGPIITRDKVRDTLARLVQNEHFIDMVYREMLNA

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
45	66	16	16		0.988813
50	83	16			0.994512
51	83			16	0.994512
62	16	83			0.994512
65	83			16	0.994512
66		16		83	0.994512
68	16	83			0.994512
125	83		16		0.994512
282	22	77			0.999999
431	91	8			0.999766
491		91	8		0.999807
492	91			8	0.999807
495		8	91		0.999807
499		86	4		0.999539
668	88			11	0.923564
669	11			88	0.923564
906	89		10		1.0
1005	82			17	1.0
1008	11			88	0.999952
1012	11	88			0.999952
1013		88	11		0.999952
1014	88			11	0.999952
1015			11	88	0.999952
1017	11			88	0.999952
1021		12		87	0.999964
1040			46	53	1.0
1105		58	41		1.0
1123	78		21		1.0
1128			18	81	1.0
1131		81	18		1.0
1132	81			18	1.0
1133		81	18		1.0
1138	76		21		1.0
1140	81			18	1.0
1142		80		19	1.0
1144	19	80			1.0
1146	80			19	1.0
1148	19	80			1.0
1386	7	92			0.999532
1387		8		91	0.999766
1500			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain