SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9564

Length: 1881 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9564

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	f-box family protein	-	-	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	0.0	68%
Blast2go	F-box domain, Skp2-like	IPR022364	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D5

Fln msg: your sequence is longer than subject: 383 - 348

Fln protein: MYLEFAARNYSQMGGRPRVCEMSDSDDHMDRLPDSLLLLIFNKLDDIKSLGRCCAVCKRFNTLVPQVDNVIVKVDCVISGDESGLNVKGKGIFGHLMRFVLGSIVKPLQALQQFLGHKRAILEEISHHSPGEVLRNFKEIKHLRIELPGGELGIEDGVLLKWKAEFGTTLESCVILGASSLAKKGKKSNLCLNNSEAESVVDGENLVSVEDGNGNSNGNNGNGSGVGIPEPFYTNGGLKLRVVWTISSLIAASARHFLLQQIICDHPSLESLVLTDCDGQGMLCMGKQQLCEFREKPLVASASSNRTQVPALNMKLWYAQSLELPGGMRMEGATLVAIRPSDRPMVKKDTDAFIAGAFEEPFKTAAKALAKGRTYLLEMNSF*

Protein Length: 384

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCTTTAATAACCAGGTCCGCCTTTAGCCGGCAGATAATGAAGTTTCGGCTTTTTCTTTGCAAGAAACCCCCCGGTGTTTGAATACTTCTTTTTTCCAGATGCTTGTCCTCGTGGAGTTTGCGTATAGGATCCGGGGTTTTGACATATAAAGCGACACACTTAGCAGTAGGCTGATAGATTTAGAGCCATATATCATT_-_ATGTATCTCGAGTTCGCTGCCCGTAATTATTCACAGATGGGAGGAAGGCCTAGGGTTTGTGAAATGAGCGACAGCGATGATCACATGGATCGGCTACCCGATTCTTTGCTGCTGCTGATCTTTAATAAGTTGGATGATATTAAGTCTCTGGGGAGGTGTTGTGCTGTTTGTAAGAGGTTTAATACCCTGGTTCCGCAGGTGGATAACGTGATTGTTAAGGTTGATTGCGTGATATCTGGGGACGAGAGTGGATTGAATGTTAAGGGTAAGGGGATTTTTGGACATCTGATGAGATTTGTGCTGGGGAGTATTGTTAAGCCCTTGCAGGCTTTGCAACAGTTTCTGGGGCACAAGAGGGCTATTTTAGAGGAGATTTCGCATCATTCGCCTGGTGAAGTGCTGAGGAACTTTAAGGAGATTAAGCATCTGAGGATCGAGTTGCCTGGTGGGGAATTGGGGATCGAGGATGGGGTTCTCTTGAAATGGAAGGCTGAATTTGGGACCACGCTGGAGAGCTGTGTGATTCTGGGAGCCTCGTCCCTAGCAAAGAAGGGGAAGAAGAGCAATCTGTGTCTTAATAATTCTGAGGCAGAGAGTGTTGTCGATGGCGAAAACTTGGTCTCTGTGGAAGATGGCAATGGGAACAGCAATGGCAATAATGGAAATGGCAGCGGTGTCGGCATTCCGGAACCGTTCTACACGAATGGGGGTTTGAAGTTGCGTGTGGTTTGGACGATAAGCTCTCTCATCGCAGCTTCTGCCAGGCATTTTCTGCTACAACAGATCATTTGCGATCACCCTTCTCTAGAGAGCCTTGTTCTCACTGATTGCGATGGTCAGGGTATGCTATGTATGGGAAAACAGCAGCTGTGCGAGTTTAGAGAGAAACCGTTGGTAGCTTCTGCATCGTCCAATCGGACGCAAGTTCCGGCATTGAATATGAAGTTGTGGTATGCTCAATCTCTTGAGCTTCCAGGCGGTATGAGGATGGAGGGAGCTACGCTCGTTGCTATCAGGCCTAGTGATCGACCAATGGTGAAGAAGGACACTGATGCTTTCATTGCTGGCGCTTTCGAAGAGCCATTTAAAACAGCAGCAAAAGCTCTAGCCAAAGGAAGGACTTATCTCTTGGAAATGAATTCATTCTAG___TAGGGTACTCTGTAGCGGGAAGCAGTTAATTTTAGCAATTCTAACCCCTATTGTATAGTGCTTTCTACCTCGATCCCCTTTTTTATTTTCTGGATGTTCATATTTTCTTGTTTACTTCTCACCAAGGATGAGGCTTTTGAGCTTCCATACTGTTTAGTCAATGCTCAAAGTATCGTAATCCAAGAAGATTGAGCAAATAGCGTGAAACTAACTTATCTCTAACCAACACAGTGTCCTGTCTTAGAAAACTTGCAAGTATGCGTTGGGTTCCTCCTCCTCTTTGCAAGAGGATTATTTTAGCAACTTGTTTCTTGCTGTTGCAGTGCTGCTCTTCTCCGCCTCTTAAAAAAATACTGCTATCATTGCCACTGGTTGTGTCAACTACGTTGAAATTCATCAACGCGATGAGGATATGCTGTAAATGCTGAGATCTTCTTTCTAGCAATGTAAATTATATTGAAACTTGTAATATGATGTTCAATTATTGATAATCTTATTGTTTTGTGCT

Fln Alignment:

sp_v1.1_unigene9564___DHMDRLPDSLLLLIFNKLDDIKSLGRCCAVCKRFNTLVPQVDNVIVKVDCVISGDESGLNVKGKGIFGHLMRFVLGSIVKPLQALQQFLGHKRAILEEISHHSPGEVLRNFKEIKHLRIELPGGELGIEDGVLLKWKAEFGTTLESCVIXXXXXXXXXXXXXNLCLNNSEAESVVDGENLVSVEDXXXXXXXXXXXXXXVGIPEPFYTNGGLKLRVVWTISSLIAASARHFLLQQIICDHPSLESLVLTDCDGQGMLCMGKQQLCEFREKPLVASASSNRTQVPALNMKLWYAQSLELPGGMRMEGATLVAIRPSDRPM-VKKDTDAFIAGAFEEPFKTAAKALAKGRTYLLEMNSF
D5A9D5______________DHLDRIPDSLLLLIFNKVADIKALGRCCAVSKRFNFLVPQVENVVVKVDCVISGEDGGLNAKGKGIIGHLVRFMIGSIVKPLQALQHFIGPRKAILAEVSHHSPAEVLKNFKEIQHLRIELPGGELGVEDGVLLKWKAEFGSTLESCVIFGAASVLSKGLKTG-SRRKIQLVSDDEPEGLEGLEDDNG------------SIPDSFYINSWLKLRVVWTISSLIAASARHFLLKEIIHDHPTLQNLVLTDADGQGTLCMGREQLCEFRDKPLAASPSSNRTQVPALNMKLRYAPTLELPSGTVMQGATLVTIRPSDQTIAAKKESEGFIVGAFEGPYRAAAKILSRRRTYLLEMNSF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
417			75	25	0.996473
452		25		75	0.996473
475	20		80		0.995493
480			20	80	0.995493
511	87		12		0.992554
520		12	87		0.992554
521	87	12			0.992554
524			12	87	0.992554
529	12			87	0.992554
530		12	75		0.975346
531			87	12	0.992554
532		12	87		0.992554
533	12		87		0.992554
1749		11		88	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain