SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9549

Length: 928 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9549

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.8026e-45	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	2.8026e-45	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	2.8026e-45	62%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 32 aas, putative chimeric sequence, your sequence is shorter than subject: 218 - 486

Fln protein: LDSETYNVLIESFLCKGLPWEAKYTLDKMMEIGHLPNASTFRSVIDGLYSDGRFQTASRVMKCMLEKDIKENFDLIPNILETLLDRGHVEEVIDRLELMFVKGCAPDLNKLSNGLCEKGKSFTACQLLQFALQKNCNIKAATYDTVLNGLCADGKANQAFYLLFRITKKGSRLPTLTCYETLISSLQAEGKTEQAELVSSRFMGKSSKGKEVEKKAN*

Protein Length: 219

Fln nts: CTTTGGACAGTGAAACATACAACGTCCTTATTGAAAGTTTCCTGTGCAAGGGACTGCCGTGGGAAGCCAAATATACTTTAGACAAGATGATGGAAATTGGTCATCTACCCAATGCTTCTACATTCCGTTCAGTGATTGACGGTCTCTATTCAGATGGCAGATTTCAGACTGCCAGTAGGGTTATGAAATGTATGTTGGAGAAGGACATAAAAGAAAACTTCGATCTTATTCCCAATATTTTGGAAACTCTTCTGGATCGTGGCCATGTGGAGGAAGTCATTGACCGACTTGAGTTGATGTTTGTAAAAGGCTGTGCTCCCGATCTGAACAAACTCTCGAATGGTCTTTGTGAAAAGGGGAAATCTTTCACAGCTTGCCAACTGCTACAATTTGCATTGCAGAAGAATTGTAATATAAAGGCTGCTACTTATGACACCGTTCTCAATGGACTTTGTGCTGATGGCAAAGCTAATCAGGCCTTTTATCTCTTATTTCGAATTACAAAGAAGGGTTCTCGTTTACCCACTCTCACCTGCTATGAAACTTTAATCAGTAGTCTTCAAGCAGAAGGCAAAACGGAACAGGCAGAGCTTGTCTCAAGTAGATTTATGGGCAAAAGCAGTAAAGGAAAGGAAGTTGAAAAGAAAGCCAACTAA___ATTACTTCAAACTGTAGATTTTTATTTTGGTCATGATGTAGAATTACAAATTGGCGAATTTTCAAGAGAATTTATATATGCCATCTTAGGAGAGAACAGAAATCTTCAATTGTCAGATCATTTTATTGGAGAGACTGGAATTTATACTCTTTGAATCTTGATCCATGTGGTTGGATCTGATCTGAAGATCATCTTTATCAAATGAGGTGTGTTGTCCTTTAATATTATATCTGGGAATAATTAAGTCATTGCAATAAAATAAACAGTCAATG

Fln Alignment:

sp_v1.1_unigene9549___DSETYNVLIESFLCKGLPWEAKYTLDKMMEIGHLPNASTFRSVIDGLYSDGRFQTASRVMKCMLEKDIKENFDLIPNILETLLDRGHVEEVIDRLELMFVKGCAPDL---NKLSNGLCEKGKSFTACQLLQFALQKNCNIKAATYDTVLNGLCADGKANQAFYLLFRITKKGSRLPTLTCYETLISSLQAEGKTEQA
D5AAH0______________NTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGF-IPHISIYHLLITGLCNEGKVGEA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
466	90			10	0.90298
467	90			10	0.90298
468	90		10		0.90298
472	90		10		0.90298
477		10	90		0.90298
478			90	10	0.90298
480	10	90			0.90298
600	89		10		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain