SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9545

Length: 955 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9545

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	High-affinity nitrate transport system component n=2 Tax=Cucumis sativus RepID=C8CHG8_CUCSA	-	-	1.99993e-41	45%
FL-Next	sp=High-affinity nitrate transporter 3.1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Blast2go	component of high affinity nitrate transporter	-	-	4.43091e-42	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	4.43091e-42	66%
Blast2go	response to nitrate	GO:0010167	Biological Process	4.43091e-42	66%
Blast2go	nitrate transport	GO:0015706	Biological Process	4.43091e-42	66%
Blast2go	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	4.43091e-42	66%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
113	33	66			0.997452
311	75		25		0.996473
400	25	75			0.996473
401			75	25	0.996473
450		83		16	0.994512
451		83	16		0.994512
517			85	14	0.993533
518	85		14		0.993533
519	85		14		0.993533
544		14		85	0.993533
724	85		14		0.993533
874			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain