SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9541

Length: 2072 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9541
CGTCGTGACCTTGGCTGTCATTCAGTTGTACCTTATCCACGCTCTATACTCAAACCAGCAAACTGAGTTTCCTCCTTGTTCGAGCTTTCCATTGCATTCCTTCGACTACAGCCCTCCCGGTCAAGAGTAACCTTAAAGACAGTAAGGGCATTTTGTCCATAAAATTTCGAATATTCCGGCAGTAAAGTTAAACTTGAGGCATGGTCAAGGCGTGAAACGAAGGAATGTTTGCAATACCAGTTATAATCCTAAGAACTTACCAGGGTTACCTTCAGAGAAGACGAGCTCATGGCTACAGCCTCCGCTTCCGCTTCCGCTCATTTGCAAGCCAATTTGGAGCAGGAGAAGAAATTTAGTGCTCGAGGGACTTCAGAAACCGTCCGCACTTCTTCTAGGTATTGGATTCGCCCTGGTGTCCATCAATCTTATAGCCCGCATCGAACATTGTACAGTCACTCTAGATCGGGAATTGGGATTGAAAATGGCTTCTGTGGCCCCCTACGGCCGTCGTTCTCTGATAAGGTCGATCTGGTAATAAATGCTTTACCAGGGTTTTATTCCGGTTGTGGTCTGCGCAGCCCTAATGGCATGGGTTTCAAAGGAATGAGGTCAGGTTTTGTACCTGGGCGATTTTGGCTAAATAGCTACTCCATTAAAGGGTCGGCTGCAAGTAACCGGCAATTTTACCTGAATAGCTATCCTCTAAACCTGGCATCTAAGGCTAGGGAAGTCCATGCCATGCAGCACACATTTCCACATGGAAATACGGTACTTAAACTAAAACAGCATGTCTGCAGGGGTAAAGCTTTGGCAGCAATTGATGAATCTGTTTGCCATCCACAACATAAGGAATCTGGAGATTTTGTAGATCAAGATGTAGGGAGTTCAATTCTGCAGGGATGGACACCACCCAGATATGTGTGGAGAGCTCTGGCCGCGTGGATGATAGCAGGTCAGGTGATTGCCAGGGTTTTAAAGGGCAAAATCCATTCAAAAAATGTTTTCCAGCAGCTTGAGGTGGTTGGGCCTGGTTCCACTGGAGTTTGCTTGCTGACAGCTGCATTTGTGGGGATGGCTTTCACCATTCAGTTTGTGAGGGAGTTTACCAGACTGGGCTTGACTAGATCAGTTGGAGGAGTGTTGGCTCTCGCTTTCTCGCGGGAGCTCAGCCCGGTTGTTACAGCTATCATCATTGCAGGCCGAGTTGGCAGTGCGTTTGCTGCAGAGTTGGGCACTATGCAGGTATCTGAACAGACTGATACATTGAGGGTGCTGGGAACAGATCCTGTGGATTACCTTATAATTCCACGGGTTTTGGCGTGTTGTTTGGCTTTGCCAATTTTGACCTTGATCTGCTTCAGTATATCCATAGCTGCTAGTGTTTTGTTGGCTGATGGAGTCTACAATGTAAGTGCCAACATTATCTTGGAGTCTGCAAGAAGGTCTTTGGACCCCTGGGACATTATCAGTGCAATGGTGAAATCTACAGTTTTTGGTGGACTGATTTCTGTAATAAGTTGTGCATGGGGAGTTACAACTCTAGGAGGGGCAAAAGGTGTAGGGGAGTCTACAACTTCTGCAGTTGTAATCTCCCTAGTTTGTATCTTCGTTGCAGATTTTGTGCTGTCATGGTGCTTTTTCCAAGGTGCAGGAGATGCTCTTAAGGCTGCTATGGGCTAGTTTCTAGCTCGGTATGACTATTGTCATTTGAACATGTGCATATGTAAACTGGCTGTTAAAATATGCATGTATTTTGAGAAAGAATTTATGGCAATCATTTTATGTTAAATTGTTGCAGAGCCATTGTCACCTGAACAGCGAGCGAAGCAGAGTTAGCAGCCATCTGACAAGCTTGCATTTTGATGTTTCATAAATATAGATCTATAACGTTGAAATATTTGTTGGGTGCTGTCAGGATTTCATTTTATTTCTGAAGGTTGTTTTTCTTTATATGACGGTAGTGTCATGATTTTGGGATCCTTTCTGGTGAAACAATAGTTGGGCATTTCTTCATATATGCTCATTCTCGTTGCAGAACATACACTTGAACATTCACCAAAAAGTTCTTTACA

Ace file of the UniGene sp_v1.1_unigene9541

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily I, member 10, SmABCI10 n=2 Tax=Selaginella moellendorffii RepID=D8QQK4_SELML	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	tgd1 (trigalactosyldiacylglycerol 1) lipid transporter	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	85%
Blast2go	lipid transporter activity	GO:0005319	Molecular Function	85%
Blast2go	chloroplast outer membrane	GO:0009707	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXM7

Fln msg:

Fln protein: MATASASASAHLQANLEQEKKFSARGTSETVRTSSRYWIRPGVHQSYSPHRTLYSHSRSGIGIENGFCGPLRPSFSDKVDLVINALPGFYSGCGLRSPNGMGFKGMRSGFVPGRFWLNSYSIKGSAASNRQFYLNSYPLNLASKAREVHAMQHTFPHGNTVLKLKQHVCRGKALAAIDESVCHPQHKESGDFVDQDVGSSILQGWTPPRYVWRALAAWMIAGQVIARVLKGKIHSKNVFQQLEVVGPGSTGVCLLTAAFVGMAFTIQFVREFTRLGLTRSVGGVLALAFSRELSPVVTAIIIAGRVGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLIIPRVLACCLALPILTLICFSISIAASVLLADGVYNVSANIILESARRSLDPWDIISAMVKSTVFGGLISVISCAWGVTTLGGAKGVGESTTSAVVISLVCIFVADFVLSWCFFQGAGDALKAAMG*

Protein Length: 465

Fln nts: CGTCGTGACCTTGGCTGTCATTCAGTTGTACCTTATCCACGCTCTATACTCAAACCAGCAAACTGAGTTTCCTCCTTGTTCGAGCTTTCCATTGCATTCCTTCGACTACAGCCCTCCCGGTCAAGAGTAACCTTAAAGACAGTAAGGGCATTTTGTCCATAAAATTTCGAATATTCCGGCAGTAAAGTTAAACTTGAGGCATGGTCAAGGCGTGAAACGAAGGAATGTTTGCAATACCAGTTATAATCCTAAGAACTTACCAGGGTTACCTTCAGAGAAGACGAGCTC_-_ATGGCTACAGCCTCCGCTTCCGCTTCCGCTCATTTGCAAGCCAATTTGGAGCAGGAGAAGAAATTTAGTGCTCGAGGGACTTCAGAAACCGTCCGCACTTCTTCTAGGTATTGGATTCGCCCTGGTGTCCATCAATCTTATAGCCCGCATCGAACATTGTACAGTCACTCTAGATCGGGAATTGGGATTGAAAATGGCTTCTGTGGCCCCCTACGGCCGTCGTTCTCTGATAAGGTCGATCTGGTAATAAATGCTTTACCAGGGTTTTATTCCGGTTGTGGTCTGCGCAGCCCTAATGGCATGGGTTTCAAAGGAATGAGGTCAGGTTTTGTACCTGGGCGATTTTGGCTAAATAGCTACTCCATTAAAGGGTCGGCTGCAAGTAACCGGCAATTTTACCTGAATAGCTATCCTCTAAACCTGGCATCTAAGGCTAGGGAAGTCCATGCCATGCAGCACACATTTCCACATGGAAATACGGTACTTAAACTAAAACAGCATGTCTGCAGGGGTAAAGCTTTGGCAGCAATTGATGAATCTGTTTGCCATCCACAACATAAGGAATCTGGAGATTTTGTAGATCAAGATGTAGGGAGTTCAATTCTGCAGGGATGGACACCACCCAGATATGTGTGGAGAGCTCTGGCCGCGTGGATGATAGCAGGTCAGGTGATTGCCAGGGTTTTAAAGGGCAAAATCCATTCAAAAAATGTTTTCCAGCAGCTTGAGGTGGTTGGGCCTGGTTCCACTGGAGTTTGCTTGCTGACAGCTGCATTTGTGGGGATGGCTTTCACCATTCAGTTTGTGAGGGAGTTTACCAGACTGGGCTTGACTAGATCAGTTGGAGGAGTGTTGGCTCTCGCTTTCTCGCGGGAGCTCAGCCCGGTTGTTACAGCTATCATCATTGCAGGCCGAGTTGGCAGTGCGTTTGCTGCAGAGTTGGGCACTATGCAGGTATCTGAACAGACTGATACATTGAGGGTGCTGGGAACAGATCCTGTGGATTACCTTATAATTCCACGGGTTTTGGCGTGTTGTTTGGCTTTGCCAATTTTGACCTTGATCTGCTTCAGTATATCCATAGCTGCTAGTGTTTTGTTGGCTGATGGAGTCTACAATGTAAGTGCCAACATTATCTTGGAGTCTGCAAGAAGGTCTTTGGACCCCTGGGACATTATCAGTGCAATGGTGAAATCTACAGTTTTTGGTGGACTGATTTCTGTAATAAGTTGTGCATGGGGAGTTACAACTCTAGGAGGGGCAAAAGGTGTAGGGGAGTCTACAACTTCTGCAGTTGTAATCTCCCTAGTTTGTATCTTCGTTGCAGATTTTGTGCTGTCATGGTGCTTTTTCCAAGGTGCAGGAGATGCTCTTAAGGCTGCTATGGGCTAG___TTTCTAGCTCGGTATGACTATTGTCATTTGAACATGTGCATATGTAAACTGGCTGTTAAAATATGCATGTATTTTGAGAAAGAATTTATGGCAATCATTTTATGTTAAATTGTTGCAGAGCCATTGTCACCTGAACAGCGAGCGAAGCAGAGTTAGCAGCCATCTGACAAGCTTGCATTTTGATGTTTCATAAATATAGATCTATAACGTTGAAATATTTGTTGGGTGCTGTCAGGATTTCATTTTATTTCTGAAGGTTGTTTTTCTTTATATGACGGTAGTGTCATGATTTTGGGATCCTTTCTGGTGAAACAATAGTTGGGCATTTCTTCATATATGCTCATTCTCGTTGCAGAACATACACTTGAACATTCACCAAAAAGTTCTTTACA

Fln Alignment:

sp_v1.1_unigene9541___ASASASAHLQANLEQEKKFSARGTSETVRTSSRYWIRPGVHQSYSPHRTLYSHSRSGIGIENGFCGPLRPSFSDKVDLVINALPGFYSGCGLRSPNGMGFKGMRSGFVPGRFWLNSYSIKGS--AASNRQFYLNSYPLNLASKAREVHAMQHTFPHGNTVLKLKQHVCRGKALAAIDESVCHPQHKESGDFVDQDVGSSILQGWTPPRYVWRALAAWMIAGQVIARVLKGKIHSKNVFQQLEVVGPGSTGVCLLTAAFVGMAFTIQFVREFTRLGLTRSVGGVLALAFSRELSPVVTAIIIAGRVGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLIIPRVLACCLALPILTLICFSISIAASVLLADGVYNVSANIILESARRSLDPWDIISAMVKSTVFGGLISVISCAWGVTTLGGAKGVGESTTSAVVISLVCIFVADFVLSWCFFQGAGDALKAAMG
A9NXM7______________AAASASTHLQTNLQQEKKFSAGGTSNTIWASSRYRISLGAHQSYCPQQALYS-PRLGCATENGFCGPMRRSFSGEVDRVLNSLPGFYSGCGLRSPNGMGFKGTRSGFAPGRLWPDSYSIKGMRLAAIPRRFYPFSYPLNLTSKPKEVHAMQHTFPNGNIVLKIKHFICRGKASAGIDDSVFHLQGKESGGFVDQEVVGSILKGWTPPRYVWRALAAWVIAGQVIARVFKGKIHTRNTLQQLEVVGPGSSGVCLLTAAFVGMAFTIQFVREFTRLGLTRSVGGVLALAFSRELSPVVTSIIIAGRVGSAFAAELGTMQVSEQTDTLRVLGTDPVDYLIIPRVIACCLALPILTLICFSVSLAASVLLADGVYNVSANIILESARRSLHPWDIISAMVKSTVFGGLISVISCAWGVTTLGGAKGVGESTTSAVVISLVCIFIADFILSWCFFQGAGDALKAAMG

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
21		25		75	0.996473
56		85		14	0.993533
57	85	14			0.993533
59		85		14	0.993533
60	85		14		0.993533
62	85	14			0.993533
65			85	14	0.993533
66	85		14		0.993533
68		14		85	0.993533
70			14	85	0.993533
71		85		14	0.993533
73	14			85	0.993533
75		85		14	0.993533
76		14		85	0.993533
77	14			85	0.993533
269		87		12	0.999964
271			12	87	0.999964
272			12	87	0.999964
273		87	12		0.999964
278	68		31		1.0
329		73		26	1.0
355	78	21			1.0
398	86			13	0.999973
400			13	86	0.999973
402	14		85		0.999981
405			14	85	0.999981
499		75		25	0.996473
513		50		50	1.0
541		25	75		0.996473
717			75	25	0.996473
745	75	25			0.996473
773		25		75	0.996473
775	50			25	0.995533
776	75		25		0.996473
777	75		25		0.996473
780	66		33		0.997452
781	66			33	0.997452
782	66	33			0.997452
785	66			33	0.997452
786		33	66		0.997452
787	33	66			0.997452
813	75		25		0.996473
1014			25	75	0.996473
1078		16		83	0.994512
1282	85		14		0.993533
1672			7	92	0.999664
1683			8	91	0.999766
1690		50		50	1.0
1773			18	81	0.999994
1887	42		57		1.0
1891		42	57		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
301	318	TCCGCT TCCGCT TCCGCT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain