SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9529

Length: 2198 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9529
CATACACAGAAATCTAGACTTTGAAATCTTTCTAAATTCTGTATGGAACCCTGAACTGTAGCAGGGTTCGATTACCACTATGGATGAGGCCGCGCCTGCCAAGGCTCCTCTCCCCTGTGACTACTGTGGCGAAGCGAATGCAGTTATCTACTGCCGAGCTGACTCCGCCAAGCTCTGCCTGCCATGCGACCACCACGTCCATTCTGCCAATGGCCTGTCCAAGAAGCATGTCCGATCCCAGCTCTGCGATAGCTGCAAAGACGAGCCCGTTACTGTTTACTGTGAGGCCGATGACGTGGTTCTTTGCCAAGAATGCGACTGGGACACCCATGGAGGAGCCTCCAATGGCCACCACCAGCGCCACTCCATCGAAGGTTTCACGGGCTGCCCCTCCGCTGAAATTCTGGCCAGCAGGTGGGGTTTCGATCTCAGCGACAAATCTCTCAATAACTCTGCTTCGCCCCTCGGGCTCACCGATCCCCAGTGCGGGAACTCCCTCGTATGGGGAACGCTTGATGATTCTCTCGACTGCATCGTATCGGGTCGTATGAAAGCTGATCCTGTGGATTCCTGGCTCTGCACGCCGTCCTCAGCTCTTCAGGACGTTCTCGTCCCCAATCCAAACTTGGGGCCCGTCGTATTCCCGGCCCCAGGGAAGCAACAAAATCATCCTCTGTGTGGTAAGCAGAAGCAAGTAATATTTGAACAGCTGCTTGAGCTGATGAAGCGGGAAGGAAGTACAGAAAACCCCGAGGACGATGAAGAAGAAGCAAAGCCTATTTCCAGACCAGGCACTCCTAATCAACATCAGCCAATTCATCCAGCCCTAGAGGTAAATGATGCGGGAAACCAAAATCCATCACAGGGCGAACAACGCTCTGTAGAGGCAATTCGTCCTATTCCTTCCTCGTCATTGCTGATGCTTCAACAGAACGGATCAAATCGTGCTATTGAGCAAGATATTATCTGGAATCGCAGCTCTGGGAACCAAGCATCCCAGGGTTGGGATTTGAATGCACATAATGCCACAAATTGTGAGGGTCACAACATAGATAGATACAATGTAGCTGATATAGAGTTTAGCAATTTTAAGAGTTACAGTGACCTACTTGAAAATGCTTGCAATGACTCTGTGATATCTTTGGAGAACATTAGCACTATGAAATGCTCACCAAAACATACTACTCGACCGAGTCTCCAGTACTTTGCTTCACATGATCCCTGCGCAATACAGCCAACTGGGAAATGGCTTAGCAATCTTCCGGGCTCAGTTGGTCAAGTTCCTGGATCACCTCGTGTTCCAATAGAAACTGCTTGTTTGGGAATATCTGCAGGGGAATTGAATGGAAATGATGCAAAACCCCCTACAAAGGTAGATGACTCAGGTTTGGCATCAACTTCAGCAAAGCTTGGAAAAGACACTATTAGCCCTGATTGCGATCGCAATGTCTCCTCATTGTTCAAGGGGGATCCTGGACGAAACACAACCAAGCTTGACAATGAAGCATTAGCCCAAGCACGAGGCAATGCAATGTTGCGGTACAAGGAAAAGAAAAAGACAAGAAGATATGAGAAGCACATTCGTTATGAATCTCGTAAAGCTCGAGCCGATGTAAGGAAGCGCGTGAAGGGTCGCTTTGTAAAAGCAGACAAAGAATGTGATCAAGATGCCCTTGGAAGTAGCAATTAAAGATTTACCTCTGTAGTGGGAAATGTTCAACCTGAAAATTATTTTGAATATTTTCAAATTTGGATTGCCTTTAACATCAAGGGAAATGTTCTTTGAAATCAACATACCTTGTTTGTTTGGCAGAATGTGTGCATAATGCTAAACAGGAAATGATGCTGTGAAGGACAGTAAGTTGAATCTGGTCCATAATTGGTGGCCAGGGCAGCATTTGATGTAACTAATCTAGGCCCATCCATTTCATCACTCAGGGTCGTCTGTTATCTTTGTATTGTAATAAGTCGTCAGTATAACTTTCCTGATGAATGAAGTCATGACATTTTGGTTTTTCATCGCAGTTCAATGCATTCTTCCTGTGTCTTTCTGAAGATGTCAAAACCAAATTGTAGACATACAATATATTTGAGGTCACCAGCCCCACATGAAGGTATTGGGAATGATATTACAGTGCATTCCCATTATATTTGGGGCAAATTGATCTTGTATGTTATTAATTTGATACAGTGAATTT

Ace file of the UniGene sp_v1.1_unigene9529

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	COL domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIW6_MALDO	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	zinc finger (b-box type) family protein	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, B-box	IPR000315	-	0.0	59%
Blast2go	CCT domain	IPR010402	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUQ9

Fln msg: your sequence is shorter than subject: 537 - 555

Fln protein: MDEAAPAKAPLPCDYCGEANAVIYCRADSAKLCLPCDHHVHSANGLSKKHVRSQLCDSCKDEPVTVYCEADDVVLCQECDWDTHGGASNGHHQRHSIEGFTGCPSAEILASRWGFDLSDKSLNNSASPLGLTDPQCGNSLVWGTLDDSLDCIVSGRMKADPVDSWLCTPSSALQDVLVPNPNLGPVVFPAPGKQQNHPLCGKQKQVIFEQLLELMKREGSTENPEDDEEEAKPISRPGTPNQHQPIHPALEVNDAGNQNPSQGEQRSVEAIRPIPSSSLLMLQQNGSNRAIEQDIIWNRSSGNQASQGWDLNAHNATNCEGHNIDRYNVADIEFSNFKSYSDLLENACNDSVISLENISTMKCSPKHTTRPSLQYFASHDPCAIQPTGKWLSNLPGSVGQVPGSPRVPIETACLGISAGELNGNDAKPPTKVDDSGLASTSAKLGKDTISPDCDRNVSSLFKGDPGRNTTKLDNEALAQARGNAMLRYKEKKKTRRYEKHIRYESRKARADVRKRVKGRFVKADKECDQDALGSSN*

Protein Length: 538

Fln nts: CATACACAGAAATCTAGACTTTGAAATCTTTCTAAATTCTGTATGGAACCCTGAACTGTAGCAGGGTTCGATTACCACT_-_ATGGATGAGGCCGCGCCTGCCAAGGCTCCTCTCCCCTGTGACTACTGTGGCGAAGCGAATGCAGTTATCTACTGCCGAGCTGACTCCGCCAAGCTCTGCCTGCCATGCGACCACCACGTCCATTCTGCCAATGGCCTGTCCAAGAAGCATGTCCGATCCCAGCTCTGCGATAGCTGCAAAGACGAGCCCGTTACTGTTTACTGTGAGGCCGATGACGTGGTTCTTTGCCAAGAATGCGACTGGGACACCCATGGAGGAGCCTCCAATGGCCACCACCAGCGCCACTCCATCGAAGGTTTCACGGGCTGCCCCTCCGCTGAAATTCTGGCCAGCAGGTGGGGTTTCGATCTCAGCGACAAATCTCTCAATAACTCTGCTTCGCCCCTCGGGCTCACCGATCCCCAGTGCGGGAACTCCCTCGTATGGGGAACGCTTGATGATTCTCTCGACTGCATCGTATCGGGTCGTATGAAAGCTGATCCTGTGGATTCCTGGCTCTGCACGCCGTCCTCAGCTCTTCAGGACGTTCTCGTCCCCAATCCAAACTTGGGGCCCGTCGTATTCCCGGCCCCAGGGAAGCAACAAAATCATCCTCTGTGTGGTAAGCAGAAGCAAGTAATATTTGAACAGCTGCTTGAGCTGATGAAGCGGGAAGGAAGTACAGAAAACCCCGAGGACGATGAAGAAGAAGCAAAGCCTATTTCCAGACCAGGCACTCCTAATCAACATCAGCCAATTCATCCAGCCCTAGAGGTAAATGATGCGGGAAACCAAAATCCATCACAGGGCGAACAACGCTCTGTAGAGGCAATTCGTCCTATTCCTTCCTCGTCATTGCTGATGCTTCAACAGAACGGATCAAATCGTGCTATTGAGCAAGATATTATCTGGAATCGCAGCTCTGGGAACCAAGCATCCCAGGGTTGGGATTTGAATGCACATAATGCCACAAATTGTGAGGGTCACAACATAGATAGATACAATGTAGCTGATATAGAGTTTAGCAATTTTAAGAGTTACAGTGACCTACTTGAAAATGCTTGCAATGACTCTGTGATATCTTTGGAGAACATTAGCACTATGAAATGCTCACCAAAACATACTACTCGACCGAGTCTCCAGTACTTTGCTTCACATGATCCCTGCGCAATACAGCCAACTGGGAAATGGCTTAGCAATCTTCCGGGCTCAGTTGGTCAAGTTCCTGGATCACCTCGTGTTCCAATAGAAACTGCTTGTTTGGGAATATCTGCAGGGGAATTGAATGGAAATGATGCAAAACCCCCTACAAAGGTAGATGACTCAGGTTTGGCATCAACTTCAGCAAAGCTTGGAAAAGACACTATTAGCCCTGATTGCGATCGCAATGTCTCCTCATTGTTCAAGGGGGATCCTGGACGAAACACAACCAAGCTTGACAATGAAGCATTAGCCCAAGCACGAGGCAATGCAATGTTGCGGTACAAGGAAAAGAAAAAGACAAGAAGATATGAGAAGCACATTCGTTATGAATCTCGTAAAGCTCGAGCCGATGTAAGGAAGCGCGTGAAGGGTCGCTTTGTAAAAGCAGACAAAGAATGTGATCAAGATGCCCTTGGAAGTAGCAATTAA___AGATTTACCTCTGTAGTGGGAAATGTTCAACCTGAAAATTATTTTGAATATTTTCAAATTTGGATTGCCTTTAACATCAAGGGAAATGTTCTTTGAAATCAACATACCTTGTTTGTTTGGCAGAATGTGTGCATAATGCTAAACAGGAAATGATGCTGTGAAGGACAGTAAGTTGAATCTGGTCCATAATTGGTGGCCAGGGCAGCATTTGATGTAACTAATCTAGGCCCATCCATTTCATCACTCAGGGTCGTCTGTTATCTTTGTATTGTAATAAGTCGTCAGTATAACTTTCCTGATGAATGAAGTCATGACATTTTGGTTTTTCATCGCAGTTCAATGCATTCTTCCTGTGTCTTTCTGAAGATGTCAAAACCAAATTGTAGACATACAATATATTTGAGGTCACCAGCCCCACATGAAGGTATTGGGAATGATATTACAGTGCATTCCCATTATATTTGGGGCAAATTGATCTTGTATGTTATTAATTTGATACAGTGAATTT

Fln Alignment:

sp_v1.1_unigene9529___CDYCGEANAVIYCRADSAKLCLPCDHHVHSANGLSKKHVRSQLCDSCKDEPVTVYCEADDVVLCQECDWDTHGGASNGHHQRHSIEGFTGCPSAEILASRWGFDLSDKSLNNSASPLGLTDPQCGNSLVWGTLDDSLDCIVSGRMK---ADPVDSWL---CTPSSALQDXXXXXXXXXXXXXXAPGK------QQNHPLCGKQKQVIFEQLLELMKREGSTENPEDDEEEA----------------KPISRPGTPN---QHQPIHPALEVNDAGNQNPSQGEQRSVEAIRPIPSSSLLMLQQNGSNRAIEQDIIWNRSSGNQASQGWDLNAHNATNCEGHN-IDRYNVADIEFSNFKSYSDLLENACNDSVISLENISTMKCS----------PKHTTRPSLQYFASHDPCAIQPTGKWLSNLPGSVGQVPGSPRVPIETACLGISAGELNGNDAKPPTKVDDSGLASTSAKLGKDTISPDCDRNVSSLF-KGDPGRNTTKLDNEALAQARGNAMLXXXXXXXXXXXXXHIRYESXXXXXXXXXXXXXXFVKADKECDQDALGSS
A9NUQ9______________CDFCGEIRSTVYCRADSASLCLSCDEHIHGANALSKRHLRTVLCDGCSVEPAAFSCNDHKLSFCHNCDRQSH--SNSPQHRRKSISYYTGCPSAAELAELWDCELDRLGGDDQQGP-SVPGIGWGNS---GGENGSLETLLASGIDAGFAQNLGSWIEPSASPKVDLPLSSQRNSNVNTMLFDSEGSAGTMKAREDRQQQSKQKRAVVQQLLALQKSQHQTLTEVQNHEEVHAYVPAQVQVEVQSMESSLSRPLEDDFQIQSQHLERQQKGQQQGKQSLQQQKMQHVSLL--IPESEPLKSDTN-IEIAIQGDSFWRCGAASETNQLWDQNMQDLGICEDDDCCDAFHISDVDLI-FENYEDIFGGPQGESALMFEDLEA-ACSSMDKVVSIADPSGCNNNSL--LASSAP----PAGYVVALSSQEPGKEGAAPHPATGRTVQGVPGPNVPNNIRHPVQPAPASLAQSLSSYSGDGNAADYHDCDVSPIFLKGEPPWGSTNTDS-AFLNARGNAMIRYKEKKKARMYEKKIRYASRKARADVRKRVKGRFVKAGEAFDYDPLATT

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
279			20	80	0.995493
280			20	80	0.995493
288	60	40			1.0
300		40		60	1.0
336			80	20	0.995493
370		80		20	0.995493
383	60		40		1.0
418	14		85		0.993533
477		83		16	0.994512
746	10		90		0.90298
747	90	10			0.90298
748	90		10		0.90298
749	90		10		0.90298
871		71		28	1.0
900		80		20	0.999996
907	10			90	0.90298
909		90	10		0.90298
910		90	10		0.90298
911			10	90	0.90298
1039		12	6	81	0.999943
1043	12		87		0.999964
1329			14	85	0.993533
1360	75		25		0.996473
1564	83	16			0.994512
1596	14	85			0.993533
1598		85	14		0.993533
1600			14	85	0.993533
1611	12	87			0.992554
1612		87		12	0.992554
1614	90		10		0.90298
1615			10	90	0.90298
1749	87			12	0.992554
2132		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain