SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9516

Length: 976 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9516 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RBR6_RICCO	-	-	1.4013e-45	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	nucleic acid binding	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	69%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
273	33	33	33		0.997753
536	25			75	1.0
570		12		87	0.992554
574		85		14	0.993533
575		85	14		0.993533
576	14			85	0.993533
577			14	85	0.993533
578		85		14	0.993533
579		85	14		0.993533
581	85	14			0.993533
587	14	85			0.993533
594	14		85		0.993533
595	85	14			0.993533
596	85		14		0.993533
612		16	83		0.994512
614	16	83			0.994512
649	75	25			0.996473
733			75	25	0.996473
734			25	75	0.996473
736	25	75			0.996473
737		75	25		0.996473
738	66			33	0.997452
739		75	25		0.996473
741	75	25			0.996473
743	75		25		0.996473
744		25		75	0.996473
747	25		75		0.996473
748			25	75	0.996473
749	75		25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
323	334	GAA GAA GAA GAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain