SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9514

Length: 1098 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9514

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	starch branching enzyme II, putative (EC:2.4.1.18); K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]	-	-	52%
FL-Next	sp=1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic; Zea mays (Maize).	-	-	47%
Blast2go	starch branching enzyme ii	-	-	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	1,4-alpha-glucan branching enzyme.	EC:2.4.1.18	-	0.0	62%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	62%
Blast2go	Metabolic pathways	01100		0.0	62%

Source	ECs	Term	Type	e value	Identity
AutoFact	1,4-alpha-glucan branching enzyme.	EC:2.4.1.18	-	0.0	52%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Starch and sucrose metabolism	00500		0.0	52%
AutoFact	Metabolic pathways	01100		0.0	52%

Source	GOs	Term	Type	Identity
Blast2go	starch metabolic process	GO:0005982	Biological Process	62%
Blast2go	1,4-alpha-glucan branching enzyme activity	GO:0003844	Molecular Function	62%
Blast2go	chloroplast	GO:0009507	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	62%
Blast2go	Immunoglobulin-like fold	IPR013783	-	62%
Blast2go	Immunoglobulin E-set	IPR014756	-	62%
Blast2go	Alpha amylase	IPR015902	-	62%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q08047

Fln msg: Distance to subject end: 587 aas, your sequence is shorter than subject: 265 - 799

Fln protein: MAWGCFSTVHLPALYATKSGLLGSRVEAKPPSVSSSSVFPPCWQHKKLHCFSEIFYASPVLGILNNRVSLKAKYICGKASSSDTPPMSTAIAGPSSSEKVLVPGVKDDSSLPLAEDALVHSDDGLRNTEDASHDSEANAVPIQAIKEQTTKPMQNRVEFEDRPKVVPPPGSGQRIYEIDPLLNNYREHLDYRFAQYKKTRELIDKYEGGLEAFSRGYEKMGFNRSAAGITYREWAPGAKGASLIGDFNNWNPNADVMTKNEFGVW

Protein Length: 266

Fln nts: ATGGGATACCCTGACGTGTCGGATCATTATCGGTCCACAAGGGTGAAACTCTATGACAATAATGGGAGAGGCCATGGGTTCCGAGGATGAGATTTATCTTGCTCGCTCCTCATTTTCTTCTTCATATTCACAATCCAAGCTGCCAGCAGCAATATAAGCAATATAACAAGAAGGGTTTACGAAGAACACCTGATGGTTGGTTCCTTGGTACGCTAAATAAATAGATTAGTTGCTGCAGATGAGTCAGCGCTAGAGAGAGAAAGAGAGAAGGGTTTTGGTGTTTATCGGATCAGAACCTGCC_-_ATGGCTTGGGGTTGCTTCTCTACCGTACATCTTCCAGCACTGTACGCTACAAAGTCGGGTTTGCTCGGATCAAGGGTCGAAGCTAAGCCCCCCTCGGTTTCGTCCTCCTCGGTATTTCCTCCATGCTGGCAACACAAGAAGTTGCACTGTTTTTCAGAGATATTTTATGCAAGCCCAGTGTTGGGCATCTTGAATAACCGGGTTTCATTGAAAGCAAAGTATATTTGTGGAAAAGCTTCCTCTTCTGACACTCCTCCAATGTCAACGGCGATTGCTGGCCCTAGTTCTTCAGAGAAAGTGCTTGTGCCTGGTGTAAAGGATGACAGTTCTTTGCCACTTGCTGAGGATGCATTGGTTCACTCTGATGATGGATTGCGCAATACTGAGGATGCGTCACATGACTCTGAAGCCAATGCTGTGCCTATCCAGGCCATCAAAGAACAAACTACTAAGCCAATGCAAAACAGAGTTGAGTTTGAAGATCGGCCAAAAGTTGTCCCTCCACCTGGGAGTGGCCAAAGGATTTATGAAATAGATCCATTGTTGAATAACTATCGTGAACATCTTGATTATCGATTTGCGCAGTATAAGAAAACAAGAGAGTTGATTGATAAATATGAAGGTGGCTTGGAAGCATTTTCTAGGGGTTATGAAAAGATGGGATTTAATAGAAGTGCGGCTGGAATCACATACAGAGAGTGGGCACCTGGTGCTAAGGGGGCATCACTTATAGGAGATTTCAACAACTGGAATCCCAATGCTGATGTTATGACTAAGAACGAGTTTGGAGTATGGGA

Fln Alignment:

sp_v1.1_unigene9514___AGPSSSEKVLVPGVKDDSSLPLAEDALVHSDDGLRNTEDASHDSEANAVPIQAIKEQTTKPMQNRVEFEDRPKVVPPPGSGQRIYEIDPLLNNYREHLDYRFAQYKKTRELIDKYEGGLEAFSRGYEKMGFNRSAAGITYREWAPGAKGASLIGDFNNWNPNADVMTKNEFGVW
Q08047______________AAAAARKAVMVPEGENDGLASRADSAQFQSDE--LEVPDISEETTCGAGVADA-------------QALNRVRVVPPPSDGQKIFQIDPMLQGYKYHLEYRYSLYRRIRSDIDEHEGGLEAFSRSYEKFGFNASAEGITYREWAPGAFSAALVGDVNNWDPNADRMSKNEFGVW

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
62	66		33		0.997452
64	33		66		0.997452
65	33		66		0.997452
66		33	66		0.997452
79	25			75	0.996473
81		75	25		0.996473
82		75	25		0.996473
84	75		25		0.996473
521		16		83	0.994512
774	88	11			0.923564
776		22		77	0.999999
777		11		88	0.923564
781	88	11			0.923564
782		11	88		0.923564
783	88			11	0.923564
787	11		88		0.923564
789		88		11	0.923564
790	87		12		0.992554
791	87			12	0.992554
792	87	12			0.992554
794		12	87		0.992554
796		12		87	0.992554
797	12		87		0.992554
817		85		14	0.993533
886			75	25	0.996473
887			25	75	0.996473
888	75		25		0.996473
889			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain