SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9501

Length: 968 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9501

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	rab geranylgeranyl transferase like protein; K14050 geranylgeranyl transferase type-2 subunit alpha [EC:2.5.1.60]	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	47%
Blast2go	rab geranylgeranyl transferase like protein	-	-	61%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.5.1.6-	-	0.0	39%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein prenyltransferase, alpha subunit	IPR002088	-	0.0	61%
Blast2go	Protein prenyltransferase	IPR008940	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BNI9

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 322 - 542

Fln protein: RRDLGCHSMGYSSLDHEFQLLDQLLKADSRNFHGWNYRRFLADKKKSHDEDELKFTTKKINENFSNYSAWHNRSAILSHMLKNKYGGISAKEQEMTEEYELVRQALFTDSEDQSGWFYHLWLLGQTIAPIGPKLEMSWPCNGSQLVIDFNEQSHAYVSDFDTPFGTDRCMFSEGIPLVLHFSEPVKGVNTSTVSVNSLLLESESLVWTPISPHGLQAKTWVTLLKLPSTNFRVGETYTVQIRVADTLGIISLNGYNFACPTVLNFSLDVHTITIRSSGGNFETVPLAWEGENYSPLAIDENKFPIELRLGSLSIDGSASQEN

Protein Length: 323

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGGCTATTCCTCTTTAGATCACGAGTTCCAGCTTTTAGATCAGTTGCTTAAAGCTGATTCACGCAATTTTCATGGATGGAATTACCGCAGATTTCTTGCAGACAAGAAAAAGTCTCATGATGAAGATGAGTTAAAGTTTACAACAAAGAAAATCAATGAGAATTTTAGCAACTATTCAGCATGGCATAACCGAAGTGCAATCTTATCACACATGCTAAAGAACAAATATGGAGGAATCAGTGCAAAAGAACAGGAAATGACGGAGGAATATGAACTTGTTCGACAAGCACTATTCACAGATTCAGAAGATCAGAGTGGTTGGTTCTATCATTTATGGCTTCTTGGACAAACAATTGCCCCAATTGGTCCAAAATTAGAGATGTCATGGCCTTGCAATGGTTCACAACTGGTTATAGATTTTAACGAGCAGTCACATGCATATGTGTCTGATTTTGATACTCCCTTTGGTACAGATCGTTGCATGTTTTCAGAAGGCATCCCTTTAGTTCTTCATTTTAGTGAGCCAGTGAAAGGGGTAAATACTTCTACTGTTAGTGTAAATTCATTGCTACTTGAGAGTGAAAGTCTTGTCTGGACGCCAATTTCCCCTCATGGGTTACAAGCTAAAACATGGGTTACACTGCTGAAACTTCCAAGTACAAATTTTAGGGTTGGTGAAACCTACACAGTTCAGATTAGAGTGGCAGATACACTTGGAATAATTTCATTGAATGGATACAATTTTGCTTGCCCCACTGTATTGAATTTTAGTTTGGATGTCCACACAATAACAATAAGAAGCAGTGGAGGGAACTTTGAAACAGTTCCACTTGCTTGGGAAGGTGAAAATTATTCTCCTTTGGCGATTGATGAGAACAAGTTTCCCATAGAGCTACGTTTGGGTAGCTTATCCATTGACGGGAGTGCGAGTCAGGAAAATAC

Fln Alignment:

sp_v1.1_unigene9501___SMGYSSLDHEFQLLDQLLKADSRNFHGWNYRRFLADKKKSHDEDELKFTTKKINENFSNYSAWHNRSAILSHMLKNKYGGISAKEQEMTEEYELVRQALFTDSEDQSGWFYHLWLLGQTIAPIGPKLEMSWPCNGSQLVIDFNEQSHAYVSDFDTPFGTDRCMFSEGIPLVLHFSEPVKGXXXXXXXXXXXXXXXXXXXWTPI-SPHGLQAKTWVTLLKLPSTNFRVGETYTVQIRVADTLGIISLNGYNFACPTVLNFSLDVHTIT
A5BNI9______________SKGHSSVDHELQLLDRFQRADSRNFHAWNYRRFIAALKGIPDEEELKYTTKLIETNFSNYSAWHNRSVLLSHLLQNKVKGFFPKEKVLVEEYEFVHQALFTDPDDQSGWFYHLWLLDQTVKPETPLLVSTWPAHGSDIIVSAEGCLDGRALSPFTSFHSDAGTF----PLILYFNEAVEGVNSSTVTVKSVFTENKDLVWKPLATSKSCAAQAWVTHLNVPDVKLHPSTAYPIEVNLGDSQGIISLSGSHCSHPSRFAFTVCVQPLS

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
162	33		66		0.997452
164			33	66	0.997452
165			33	66	0.997452
166	66		33		0.997452
289			66	33	0.997452
361	85	14			0.993533
362	16			83	0.994512
363		14	85		0.993533
364			85	14	0.993533
366	14			85	0.993533
377	83	16			0.994512
379	83			16	0.994512
382		16		83	0.994512
892	33		66		1.0
969		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain