SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9495

Length: 2615 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9495
TTTGGGAAATGTGAAGAAGCCGGGCCATTCCAGGGGTAGGTCCGTTGATGGTCTACCTTCTCTTAAGAGTAGTACACCGTCTAGGTTATCTGGGGAGCTCAGTTCTGGCCCACCAGCTAATTGCAAGCCACCTTCTGGGCCGCAAGTTCCAACCGGAAACATATACAATGCTGCAAAGGCTTCATCTGTGTCTGGAAATGCAAATGCTAGTAATGGTGGTCATTTGCCCAGTGCAAACGTTAATAGTGTTGCTGGTGGGAACATTATAAGAGGGCATACACCTGCCCCCAGTGGAAACATTTTGCCACCCCTTTCCCCCAGTGGAAACATTGGCAACATTTTTCCCAGTGGTAAAGTTCACACCAATACCAATGCCAATGTCAACGCCAATGTCCTCAACAGTGCCAAAGGGAATCCCAAAGGAGACAGTGGTCATGGCCATGTTTTGGGATCTGGTGGTGGTAACTATGGGCATGGAAGCATAATGAAAGGGAATAGCAAACCGGAGTCTGTTGCGACTGGCAACATCCAGTTCGCTGGAGAGGGCATGCTGCTGAAGCGGGCTATGTCCAGTACAGATCCAGAGGATGTGAAGAATGCAGCGAATGATCAATACAAAAAGGGCCATTTTGCAGAAGCATTGGCTCTGTATGATAGGGCTATTTCGCTGTCTCCCGGAAGTGCACCTTATAGAAGTAACAGGGCTGCTGCACTCACTGGGCTTGGACGATTTGCAGAGGCAGTGTCAGAATGCCAAGACGCAATCAGATTGGATCCTTCCTATGCCCGGGCTCACCACAGACTTGCATCACTCTATCTCAATTTAGGGCAGGTAGATAATGCCAGAAGGCAATTCAATCTATCAGGACAGCATTCAGATAGGGCTGATATTCAGAGGCTGCAGAATGTGGAGATGCATTTAACAAAGTGTGTGGAAGCTCGGAGAACAGGAGATTGGCATGGTGTATTAAGAGAGAGCGATGCAGCATTTGTTGCTGGTGCTGAATCTTCACCGCAGGTATTCGCATCTAAAGCTGAGGCATTACTGAAACTTCATAAATTAGACGAGGCAGATGCAGTTTTAATGTGTGCAGATAAGGCGGAAGGTATAAGCACACCCAGTAGGTTTCACGGGATTGTGGTTGATTCATATGTTCTCTTGGTTCGAGCGCAGGTGGACATGGCATTAGGAAGGTTTGAAAGTGCAGTTGCAGCTGCTGAGAAATCAGCTGCATTGGATTGTTGCAACCGGGAAGTGTCTTCATTGCTTCGCAGGGCTAGAGCAGTGGCCAATGCCCGTTCAATTGGAAATGAGCTCTTCAAAGTTGGGAAGTATTTGGAAGCATGTACAGCATATGGAGAAGGGTTAGAACATGATCCCATGAATGCGGTATTGCTTTGTAACAGAGCGGCCTGCAGATCAAAGCTTGATCAGTGGGACAGGTCAGTGGAAGATTGTAATCTAGCATTAAGCGTTCAACCCAACTACACTAAGGCTCTTCTTAGGCGAGCCGCATCGAATACTAAGCTTGAGCGATGGGAGGAAGCTCTAAGGGATTATGAGCTTTTGAGGAAGGAATTGCCATGGGATAAAGAGGTGCTGCAGTCTTATAACCATGTTCAAGTAGAACTCAAGAAATCTCGTGGAGAAGGGATTTACAATATGAAGTTTGGAGGGGAAGTAGAGGTGGTTTCCAGTGATGATCAATTCAGAGATGCTATTAATTCACCTTGGCCTAGCCATAGTCCATTTCAACACAAGATCAAATGACCAATGCAAAAAGATTTCTCCCTTTTTCGATCAGCTATGTGGAAGATACCGTTCTGCTAACTTTTTGAAGGTGGACATTGAAAAAAATCAGAGTTTGGCAAGGTCAGAGAGCATAAGTATTGTACCAACGTTCAAGATTTACAAGAATGGTGTCAAAGTGAAAGAGATTATTTGCCCAAGCCAGCAAGGCCTGGAGAATTCAGTGAAGCATTATTACAGCGTCTAGACAGAAAGATGCAGTCTTTATCTGCAAAACCATTACCTTATCATTCACACATTCAGTTCTGAAACACCTATAGACAGCAGAATAAAATGGATTTGATTCATATAGGAAGAGTATTTTCCTGCTTTTTCTCTGATTCTTTGTGGCCTCATCCCGTTCTCTTCAAATCTTTCTGCCTCCGAGGCCAATTTTTCCCTATTCATGTTTCTGTTTAGCCCTGACGGTGATAAAAGAGATACTCAGCAGAGATATCCTCCAAGAAAGAGGATATCAACCAAGTGCATTTGCAATTCGAGATTTTTATACGTATTCCACATCGGTGATCAGTTGTAAACAATTTGCAAATACATTCTCATTCTGTTTGATTTGTCTCGCAGAAAACATTATCAAATTGCTGGGTGCTATGGGTTCATTTGGTGCACTTGAACAATTCTATGGTATACATGATGTATAGAGAGACAAAGACAGGGCCAGATAGAAAGTCTAGTCAAGTAGGATTGGTCACTGTATATATTTTTTCAATATATTGGAAGGCCAAGTTTAATTGAATTTTTCAATATTTCTGTGTCTCTTTTTTGTACTTGAAATTCCTGCAATCTGCTAAATGAAAAATGTTTTTCC

Ace file of the UniGene sp_v1.1_unigene9495

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Small glutamine-rich tetratricopeptide repeat-containing protein A, putative n=1 Tax=Ricinus communis RepID=B9SE65_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	70%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	70%
Blast2go	response to salt stress	GO:0009651	Biological Process	70%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	70%
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	70%
Blast2go	protein binding	GO:0005515	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Blast2go	Thioredoxin	IPR005746	-	70%
Blast2go	Thioredoxin fold	IPR012335	-	70%
Blast2go	Thioredoxin-like fold	IPR012336	-	70%
Blast2go	Thioredoxin domain	IPR013766	-	70%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRV6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 29 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 429 - 486

Fln protein: MKGNSKPESVATGNIQFAGEGMLLKRAMSSTDPEDVKNAANDQYKKGHFAEALALYDRAISLSPGSAPYRSNRAAALTGLGRFAEAVSECQDAIRLDPSYARAHHRLASLYLNLGQVDNARRQFNLSGQHSDRADIQRLQNVEMHLTKCVEARRTGDWHGVLRESDAAFVAGAESSPQVFASKAEALLKLHKLDEADAVLMCADKAEGISTPSRFHGIVVDSYVLLVRAQVDMALGRFESAVAAAEKSAALDCCNREVSSLLRRARAVANARSIGNELFKVGKYLEACTAYGEGLEHDPMNAVLLCNRAACRSKLDQWDRSVEDCNLALSVQPNYTKALLRRAASNTKLERWEEALRDYELLRKELPWDKEVLQSYNHVQVELKKSRGEGIYNMKFGGEVEVVSSDDQFRDAINSPWPSHSPFQHKIK*

Protein Length: 430

Fln nts: TTTGGGAAATGTGAAGAAGCCGGGCCATTCCAGGGGTAGGTCCGTTGATGGTCTACCTTCTCTTAAGAGTAGTACACCGTCTAGGTTATCTGGGGAGCTCAGTTCTGGCCCACCAGCTAATTGCAAGCCACCTTCTGGGCCGCAAGTTCCAACCGGAAACATATACAATGCTGCAAAGGCTTCATCTGTGTCTGGAAATGCAAATGCTAGTAATGGTGGTCATTTGCCCAGTGCAAACGTTAATAGTGTTGCTGGTGGGAACATTATAAGAGGGCATACACCTGCCCCCAGTGGAAACATTTTGCCACCCCTTTCCCCCAGTGGAAACATTGGCAACATTTTTCCCAGTGGTAAAGTTCACACCAATACCAATGCCAATGTCAACGCCAATGTCCTCAACAGTGCCAAAGGGAATCCCAAAGGAGACAGTGGTCATGGCCATGTTTTGGGATCTGGTGGTGGTAACTATGGGCATGGAAGCATA_-_ATGAAAGGGAATAGCAAACCGGAGTCTGTTGCGACTGGCAACATCCAGTTCGCTGGAGAGGGCATGCTGCTGAAGCGGGCTATGTCCAGTACAGATCCAGAGGATGTGAAGAATGCAGCGAATGATCAATACAAAAAGGGCCATTTTGCAGAAGCATTGGCTCTGTATGATAGGGCTATTTCGCTGTCTCCCGGAAGTGCACCTTATAGAAGTAACAGGGCTGCTGCACTCACTGGGCTTGGACGATTTGCAGAGGCAGTGTCAGAATGCCAAGACGCAATCAGATTGGATCCTTCCTATGCCCGGGCTCACCACAGACTTGCATCACTCTATCTCAATTTAGGGCAGGTAGATAATGCCAGAAGGCAATTCAATCTATCAGGACAGCATTCAGATAGGGCTGATATTCAGAGGCTGCAGAATGTGGAGATGCATTTAACAAAGTGTGTGGAAGCTCGGAGAACAGGAGATTGGCATGGTGTATTAAGAGAGAGCGATGCAGCATTTGTTGCTGGTGCTGAATCTTCACCGCAGGTATTCGCATCTAAAGCTGAGGCATTACTGAAACTTCATAAATTAGACGAGGCAGATGCAGTTTTAATGTGTGCAGATAAGGCGGAAGGTATAAGCACACCCAGTAGGTTTCACGGGATTGTGGTTGATTCATATGTTCTCTTGGTTCGAGCGCAGGTGGACATGGCATTAGGAAGGTTTGAAAGTGCAGTTGCAGCTGCTGAGAAATCAGCTGCATTGGATTGTTGCAACCGGGAAGTGTCTTCATTGCTTCGCAGGGCTAGAGCAGTGGCCAATGCCCGTTCAATTGGAAATGAGCTCTTCAAAGTTGGGAAGTATTTGGAAGCATGTACAGCATATGGAGAAGGGTTAGAACATGATCCCATGAATGCGGTATTGCTTTGTAACAGAGCGGCCTGCAGATCAAAGCTTGATCAGTGGGACAGGTCAGTGGAAGATTGTAATCTAGCATTAAGCGTTCAACCCAACTACACTAAGGCTCTTCTTAGGCGAGCCGCATCGAATACTAAGCTTGAGCGATGGGAGGAAGCTCTAAGGGATTATGAGCTTTTGAGGAAGGAATTGCCATGGGATAAAGAGGTGCTGCAGTCTTATAACCATGTTCAAGTAGAACTCAAGAAATCTCGTGGAGAAGGGATTTACAATATGAAGTTTGGAGGGGAAGTAGAGGTGGTTTCCAGTGATGATCAATTCAGAGATGCTATTAATTCACCTTGGCCTAGCCATAGTCCATTTCAACACAAGATCAAATGACCAATGCAAAAAGATTTCTCCCTTTTTCGATCAGCTATGTGGAAGATACCGTTCTGCTAACTTTTTGAAGGTGGACATTGAAAAAAATCAGAGTTTGGCAAGGTCAGAGAGCATAAGTATTGTACCAACGTTCAAGATTTACAAGAATGGTGTCAAAGTGAAAGAGATTATTTGCCCAAGCCAGCAAGGCCTGGAGAATTCAGTGAAGCATTATTACAGCGTCTAGACAGAAAGATGCAGTCTTTATCTGCAAAACCATTACCTTATCATTCACACATTCAGTTCTGAAACACCTATAGACAGCAGAATAAAATGGATTTGATTCATATAGGAAGAGTATTTTCCTGCTTTTTCTCTGATTCTTTGTGGCCTCATCCCGTTCTCTTCAAATCTTTCTGCCTCCGAGGCCAATTTTTCCCTATTCATGTTTCTGTTTAGCCCTGACGGTGATAAAAGAGATACTCAGCAGAGATATCCTCCAAGAAAGAGGATATCAACCAAGTGCATTTGCAATTCGAGATTTTTATACGTATTCCACATCGGTGATCAGTTGTAAACAATTTGCAAATACATTCTCATTCTGTTTGATTTGTCTCGCAGAAAACATTATCAAATTGCTGGGTGCTATGGGTTCATTTGGTGCACTTGAACAATTCTATGGTATACATGATGTATAGAGAGACAAAGACAGGGCCAGATAGAAAGTCTAGTCAAGTAGGATTGGTCACTGTATATATTTTTTCAATATATTGGAAGGCCAAGTTTAATTGAATTTTTCAATATTTCTGTGTCTCTTTTTTGTACTTGAAATTCCTGCAATCTGCTAAATGAAAAATGTTTTTCC

Fln Alignment:

sp_v1.1_unigene9495___IGNELFKVGKYLEACTAYGEGLEHDPMNAVLLCNRAACRSKLDQWDRSVEDCNLALSVQPNYTKALLRRAASNTKLERWEEALRDYELLRKELPWDKEVLQSYNHVQVELKKSR
B8LRV6______________IANAAFQAHKFSRAIELYSQAIELNSQNAVYWANRAFAHTKLEEYGSAIQDATTAVEIDAKYTKGYYRRGAAYLAMGKFKEALKDFQQVKKICPNDPDATKKLKECEKAVQKLR

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
189		12		87	0.992554
193			12	87	0.992554
194			87	12	0.992554
197	87	12			0.992554
198	87	12			0.992554
200			87	12	0.992554
201		87	12		0.992554
202	87		12		0.992554
203	87	12			0.992554
207		87		12	0.992554
208		12		87	0.992554
210		12	87		0.992554
212	87	12			0.992554
1335	83			16	0.994512
2167		18		81	0.999994
2541	40			20	1.0
2543	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain