SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9472

Length: 3258 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9472
CGTCGTGACCTTGGCTGTCACTCAATCGATATTGAAATTCAAATTATTATTGATGCAGTTGGGAGAGATCGTGGAGGTCGGGAGTCCATATCCCTCACTTTCTTTTTCATGGTTGTTTTGTCTGTTTCTTAGTCTTTACACACACTTTTATTGTGTCTTTGCTTTTAAAGAAGCTCGGTTGTGAGTATGATGTGTGAAGGGAGCAAGAGACAAAATGCAATCTTGATTTGTGTTGTTGGATATTCAAAAGCTTTCGGAATAGCCTGGCCTAGCACAGCGGAGCATTTCTTCTGTTGCATTTTTTCTTGCGTGTTGACGGAGTGCTGTTTTTCTTGGGAACAGTGAGACGACCCGTGCGTAGCATTCTTGCACTCTCTCCTTCGGCAGCGGCAAAAGATTCAGCACAGCGGATCGAATCGCTTCGGTGTTTAAATCTTCGCGACAAAGAACAAAATCCATAAGTCCAAGTGCCTGTTCCTTTCTTTAAGTTGTCTTGTGTGGAACAAGGACTTCGGGAGCTCCGGCTCTGCTTTGTCCTGTGTAGAGTCCGCCACGATGCAGAAGACGAGATCTGGGGCTTCCGGACCTTCTCCGGCCACGCCGAGACCTGCTCGGACACCGAAGAATGTGGCTTCAGACACAGACAGTACCACACCTCCGCATGCCGGTAGTAGATTATCGATGGATAGAAGTCCCAAGCCCAAAACTTCCGAGCATAAATCGCCCAGGAGTCCATTATCTGAGCCGAAGCGGCCAACTAGAGCATCCGAACTACAGCAACAGCTGGCCCAAGCGCAGGAAGAGTTAAAGAAGGCAAAAGAACAGGTAGCAATTATTGAGACTGCAAAGGCTCAAGCATTGCAAGACCTGGAAGAGGCCAAAAAACTCGCTGAAGAAACTGGTGCAAAGCTCGAGGTTTCCGAAAAAAAGGTCTTGGAAATTACCGAGAATGAAAAGGCTCAAACCCTCGCGTTACAGCAAGCGTCTGAAGAAGCTGCAAAGGAGAGAGACAGGGAATGGCAATCTAAGCTTGAATCTGTTGAAAGACAACACGCAATGGATGTGGCTGCCCTGCTTTCTACTTCTCAAGAGCTCGAAAGGGTTAATCATGAGCTGGCCTTGTCTGCGGATTCCAAGGCTATGGTTATAGCTCAAGTTGAGGCGGCTAATTTGGAAATTCAGGATTTGCGGTTAGAAATTGATACTCTGAAGATGTCTGAGCCAAATTCGTTGGATATGCATACTCTTTTGGAGATGCTCAGATCTGAGCTTAAAGAAGCTAGAGCATCCGAATCAAAGGCTGCCATGATAGCCCGTGAAGCTAACCTTAATCTAGAGGAAGCCAAGACGAAGATTGAGAGAGCAAAAGCTGAGGAGAATAAAGCACTGGAGTCCCTGAGGTCAGTAACTGCAGAGCTTGAAGAAACAAATGCAGATCTGGGAAAGGCAAAATCTTATTTGGGTTCCCTTACAGAAACTATACAGTCCCTGAATGCTGAGCTTGAAAGAACTAGATTGGAGTTGGTTGAAGCAAAGAAGAGAGAGGAAGAGATTATTTCAAAAGAAGCTGAAAGAGTAGAGAAGAATAAGAAGGAAGTGGAAAATCTGGAACTCAATCTTCTGCAAACTACTGCAGAAGCTGGGCGAGCTAAAGTGGAACTAGAGACTGCTTATGAAGAGGTGCAGAGCGCAAGACTTGAAACTGCGCAATTGAGGGCTGCTTTGGAAGCCACAGAGGGAAAATTTGAAGCAATGCTGAGTGAGGCTAGGTTGGAGGCAGATCATGTCAAAGAAGCTATTGAGAAGTATAAGCTAGAAGCAGAGGAAATCATGGCTCGGTCTACTGAAAGAGAGGGTAAATCGATGGCATCTCTGAGAGAAGCTGAAGCCAAGGCCAATGCCACAAAAGAAGAATTAGAAAAGAGCAAGATTGAAGTGGCAGATCTCAAGGCCTCTCTAATGGATCAAGAGAATGAACTGCAGAATATCAAGGAAGAAAATGAAAATCTGAAATGCAGAGAGCTTACCATTGTAGAAAAAATGGAGCAAATGGAGAAATCACTTGCCACTGCCCCAAATTCCGACTCTTCACTTTCATTGGAAGGTAATGATTCAGTAAATAAAAAACTCCAGGAGGCAGAAGCTTGTGCTCAGGAAAAAATAACAGAGGCCCTTGCAAAAGTTGAGGCTGCTAATGCCAGGGAGGAGGAGGCTATAGAGAAGTTAAAAGCTGCCATTCTCGAGATGGAAAACAGTAGCCAGAGAGCAAATAGATCATTAGAGCAGCTTGAGGCTGCACAGGCTGCTAACTTGGCTATGGAAGCCGAAATGAAGAGATTGAGGATACAGACTGAGCAATGGAAAAAGGCAGCAGATGCAGCAGCAACGGTTCTGGCAGCTGCCCATAATGGTGAACTAAATGGCAAACTAGTGGAACGATCAGCCTCTTTGGATACGCACTTACTATCAGATTCTGATGTTCTCAACATGAAACTGACATCTCCAATAATGTCAGATGATATGGAGAGCTCGCCAACTTCAAAGAAAAAGAATGCCATGTTGCGAAAAATCGGAGATTTGTGGAAAAAGCGGAGCCAGAAATGAGGTGCCTCAGCTTGGGCCTCTGCAACTTCAAGTTGTTTTTACAGGCACATTCTTTAGTTATTGGTCCTTTCTACAAGAGGTTGCTTCTTTTAGAGGGTATGCATTTTGGCTGAAAAATGAAAACATCCCTTATTATGCTATATTGTTTTTGCTGGTAAGTTCAACTTATCCTTGTAGTGCCATTAGCTCCTTCGAGGTTCTTGATCATTCTGCAACAGGGCCACTGGAAGAAATGTTGAATAATTGTTGGCCAGCATTTTGATCATTTATCGTTTATTGGTTTGTACAGAGACTTCTTCTCTATATTATGCACCAGTGAAGCTCATTGCCTGAGCTGAAACTAGGTGATATGTTAAGGGCAGTCTTGTGGCATTGTTGTCGGAATCACCGCCAGCTTCTGCTCCTTTATTCACACTCTTTTTGGTTTACTTATCGCTGTAACTATATTTAGAATAGAAATTCGATGATGCTGTACGTTTTCTGGTTAATAGACGACATTTTCAGCACCTGTGGATATGAAATAGCATATATCATCTTTTGAAGTGCAGTAATCCAAAGGTCGTCTATGGATATAGAAGATAAGTATTATGCAATTTCACTGCAATTATTATAGGCATATTCTATTTGTGATTTTAATAGTCAGACGCATGCATG

Ace file of the UniGene sp_v1.1_unigene9472

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SGR1_RICCO	-	-	28%
FL-Next	sp=Interactor of constitutive active ROPs 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	31%
Blast2go	atp binding	-	-	49%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LSS5

Fln msg: your sequence is longer than subject: 683 - 564

Fln protein: MQKTRSGASGPSPATPRPARTPKNVASDTDSTTPPHAGSRLSMDRSPKPKTSEHKSPRSPLSEPKRPTRASELQQQLAQAQEELKKAKEQVAIIETAKAQALQDLEEAKKLAEETGAKLEVSEKKVLEITENEKAQTLALQQASEEAAKERDREWQSKLESVERQHAMDVAALLSTSQELERVNHELALSADSKAMVIAQVEAANLEIQDLRLEIDTLKMSEPNSLDMHTLLEMLRSELKEARASESKAAMIAREANLNLEEAKTKIERAKAEENKALESLRSVTAELEETNADLGKAKSYLGSLTETIQSLNAELERTRLELVEAKKREEEIISKEAERVEKNKKEVENLELNLLQTTAEAGRAKVELETAYEEVQSARLETAQLRAALEATEGKFEAMLSEARLEADHVKEAIEKYKLEAEEIMARSTEREGKSMASLREAEAKANATKEELEKSKIEVADLKASLMDQENELQNIKEENENLKCRELTIVEKMEQMEKSLATAPNSDSSLSLEGNDSVNKKLQEAEACAQEKITEALAKVEAANAREEEAIEKLKAAILEMENSSQRANRSLEQLEAAQAANLAMEAEMKRLRIQTEQWKKAADAAATVLAAAHNGELNGKLVERSASLDTHLLSDSDVLNMKLTSPIMSDDMESSPTSKKKNAMLRKIGDLWKKRSQK*

Protein Length: 684

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGATATTGAAATTCAAATTATTATTGATGCAGTTGGGAGAGATCGTGGAGGTCGGGAGTCCATATCCCTCACTTTCTTTTTCATGGTTGTTTTGTCTGTTTCTTAGTCTTTACACACACTTTTATTGTGTCTTTGCTTTTAAAGAAGCTCGGTTGTGAGTATGATGTGTGAAGGGAGCAAGAGACAAAATGCAATCTTGATTTGTGTTGTTGGATATTCAAAAGCTTTCGGAATAGCCTGGCCTAGCACAGCGGAGCATTTCTTCTGTTGCATTTTTTCTTGCGTGTTGACGGAGTGCTGTTTTTCTTGGGAACAGTGAGACGACCCGTGCGTAGCATTCTTGCACTCTCTCCTTCGGCAGCGGCAAAAGATTCAGCACAGCGGATCGAATCGCTTCGGTGTTTAAATCTTCGCGACAAAGAACAAAATCCATAAGTCCAAGTGCCTGTTCCTTTCTTTAAGTTGTCTTGTGTGGAACAAGGACTTCGGGAGCTCCGGCTCTGCTTTGTCCTGTGTAGAGTCCGCCACG_-_ATGCAGAAGACGAGATCTGGGGCTTCCGGACCTTCTCCGGCCACGCCGAGACCTGCTCGGACACCGAAGAATGTGGCTTCAGACACAGACAGTACCACACCTCCGCATGCCGGTAGTAGATTATCGATGGATAGAAGTCCCAAGCCCAAAACTTCCGAGCATAAATCGCCCAGGAGTCCATTATCTGAGCCGAAGCGGCCAACTAGAGCATCCGAACTACAGCAACAGCTGGCCCAAGCGCAGGAAGAGTTAAAGAAGGCAAAAGAACAGGTAGCAATTATTGAGACTGCAAAGGCTCAAGCATTGCAAGACCTGGAAGAGGCCAAAAAACTCGCTGAAGAAACTGGTGCAAAGCTCGAGGTTTCCGAAAAAAAGGTCTTGGAAATTACCGAGAATGAAAAGGCTCAAACCCTCGCGTTACAGCAAGCGTCTGAAGAAGCTGCAAAGGAGAGAGACAGGGAATGGCAATCTAAGCTTGAATCTGTTGAAAGACAACACGCAATGGATGTGGCTGCCCTGCTTTCTACTTCTCAAGAGCTCGAAAGGGTTAATCATGAGCTGGCCTTGTCTGCGGATTCCAAGGCTATGGTTATAGCTCAAGTTGAGGCGGCTAATTTGGAAATTCAGGATTTGCGGTTAGAAATTGATACTCTGAAGATGTCTGAGCCAAATTCGTTGGATATGCATACTCTTTTGGAGATGCTCAGATCTGAGCTTAAAGAAGCTAGAGCATCCGAATCAAAGGCTGCCATGATAGCCCGTGAAGCTAACCTTAATCTAGAGGAAGCCAAGACGAAGATTGAGAGAGCAAAAGCTGAGGAGAATAAAGCACTGGAGTCCCTGAGGTCAGTAACTGCAGAGCTTGAAGAAACAAATGCAGATCTGGGAAAGGCAAAATCTTATTTGGGTTCCCTTACAGAAACTATACAGTCCCTGAATGCTGAGCTTGAAAGAACTAGATTGGAGTTGGTTGAAGCAAAGAAGAGAGAGGAAGAGATTATTTCAAAAGAAGCTGAAAGAGTAGAGAAGAATAAGAAGGAAGTGGAAAATCTGGAACTCAATCTTCTGCAAACTACTGCAGAAGCTGGGCGAGCTAAAGTGGAACTAGAGACTGCTTATGAAGAGGTGCAGAGCGCAAGACTTGAAACTGCGCAATTGAGGGCTGCTTTGGAAGCCACAGAGGGAAAATTTGAAGCAATGCTGAGTGAGGCTAGGTTGGAGGCAGATCATGTCAAAGAAGCTATTGAGAAGTATAAGCTAGAAGCAGAGGAAATCATGGCTCGGTCTACTGAAAGAGAGGGTAAATCGATGGCATCTCTGAGAGAAGCTGAAGCCAAGGCCAATGCCACAAAAGAAGAATTAGAAAAGAGCAAGATTGAAGTGGCAGATCTCAAGGCCTCTCTAATGGATCAAGAGAATGAACTGCAGAATATCAAGGAAGAAAATGAAAATCTGAAATGCAGAGAGCTTACCATTGTAGAAAAAATGGAGCAAATGGAGAAATCACTTGCCACTGCCCCAAATTCCGACTCTTCACTTTCATTGGAAGGTAATGATTCAGTAAATAAAAAACTCCAGGAGGCAGAAGCTTGTGCTCAGGAAAAAATAACAGAGGCCCTTGCAAAAGTTGAGGCTGCTAATGCCAGGGAGGAGGAGGCTATAGAGAAGTTAAAAGCTGCCATTCTCGAGATGGAAAACAGTAGCCAGAGAGCAAATAGATCATTAGAGCAGCTTGAGGCTGCACAGGCTGCTAACTTGGCTATGGAAGCCGAAATGAAGAGATTGAGGATACAGACTGAGCAATGGAAAAAGGCAGCAGATGCAGCAGCAACGGTTCTGGCAGCTGCCCATAATGGTGAACTAAATGGCAAACTAGTGGAACGATCAGCCTCTTTGGATACGCACTTACTATCAGATTCTGATGTTCTCAACATGAAACTGACATCTCCAATAATGTCAGATGATATGGAGAGCTCGCCAACTTCAAAGAAAAAGAATGCCATGTTGCGAAAAATCGGAGATTTGTGGAAAAAGCGGAGCCAGAAATGA___GGTGCCTCAGCTTGGGCCTCTGCAACTTCAAGTTGTTTTTACAGGCACATTCTTTAGTTATTGGTCCTTTCTACAAGAGGTTGCTTCTTTTAGAGGGTATGCATTTTGGCTGAAAAATGAAAACATCCCTTATTATGCTATATTGTTTTTGCTGGTAAGTTCAACTTATCCTTGTAGTGCCATTAGCTCCTTCGAGGTTCTTGATCATTCTGCAACAGGGCCACTGGAAGAAATGTTGAATAATTGTTGGCCAGCATTTTGATCATTTATCGTTTATTGGTTTGTACAGAGACTTCTTCTCTATATTATGCACCAGTGAAGCTCATTGCCTGAGCTGAAACTAGGTGATATGTTAAGGGCAGTCTTGTGGCATTGTTGTCGGAATCACCGCCAGCTTCTGCTCCTTTATTCACACTCTTTTTGGTTTACTTATCGCTGTAACTATATTTAGAATAGAAATTCGATGATGCTGTACGTTTTCTGGTTAATAGACGACATTTTCAGCACCTGTGGATATGAAATAGCATATATCATCTTTTGAAGTGCAGTAATCCAAAGGTCGTCTATGGATATAGAAGATAAGTATTATGCAATTTCACTGCAATTATTATAGGCATATTCTATTTGTGATTTTAATAGTCAGACGCATGCATG

Fln Alignment:

sp_v1.1_unigene9472___STTPPHAGSRLSMDRSPKPKTSEHKSPRSPLSEPKRPTRASXXXXXXXXXXXXXXXXXXXVAIIETAKAQALQDLEEAKKLAEETGAKLEVSEKKVLEIT----ENEKAQTLALQQASEEAAKERDREWQSKLESVERQHAMDVAALLSTSQELERVNHELALSADSKAMVIAQVEAANLEIQDLRLEIDTLKMSEPNSLDMHTLLEMLRSELKEARASESKAAMIAREANLNLEEAKTKIERAKAEENKALESLRSVTAELEETNADLGKAKSYLGSLTETIQSLNAELERTRLELVEAKKREEEIISKEAERXXXXXXXXXXXXXXXXQTTAEAGRAKVELETAYEEVQSARLETAQLRAALEAT-----EGKFEAMLSEARLEADHVKEAIEKYKLEAEEIMAR-----------STEREGKSMASLRXXXXXXXXXXXXXXXSKIEVADLKASLMDQENELQNIKEENENLK
Q9LSS5______________SSSPISATNRTPKDKSPN--VLNRRSPRSPVSEKKRPSRITELELLVSQLQEELKKAKDQISVSETSKKQAEQEAEESRKQLQEVSSKLEESQNQFVETSALEEETDKTGSLVFQSVSQEC------DWEFSATAGER------AGLAAVAHEIRQLKLQIEMVASSEAGHVKQAELYNSEVQLLR----------GNLMDTLFHVENFRNQLKDCEISEAETEALATETLRQLENAKKAVEELKSDGTKAVESYKKMAVELEQSKSRM----VWLEALVNKLQNNPADLE------------NHEILLKDYE-----------------------SLRRGESNEMDEEVSSLRCEVERLRAALEASDKKDQEGNVEAS-SRLRIQAE-LQSELKIAKSEIDELKARLMDKETELQFISEERDNFSMKLMKNQKEIDVEAELKKLREAIE--NLKADLMDKETELQIVSDENETLK

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
147		75		25	0.996473
148			25	75	0.996473
149			25	75	0.996473
150			25	75	0.996473
151			25	75	0.996473
553	50	50			1.0
2178		14		85	0.993533
2196	10	90			0.90298
2198	90		10		0.90298
2199	90		10		0.90298
2370	87		12		0.992554
2372	12		87		0.992554
2416		14		85	0.993533
2582			12	87	0.992554
2583			12	87	0.992554
2585		12		87	0.992554
2651	70	11		11	0.999887
2653			70	29	1.0
2657	76			23	1.0
2658		11		88	0.999952
2659			11	88	0.999952
2663		11		88	0.999952
3092	10		90		0.90298
3120	10		90		0.90298
3121	10		90		0.90298
3123			10	90	0.90298
3153	14		85		0.993533
3154		85	14		0.993533
3156		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain