SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9466

Length: 1788 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9466

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	reticulon family protein	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	reticulon family protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reticulon	IPR003388	-	0.0	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPJ1

Fln msg:

Fln protein: MGENYGKVTAENLLNNVMETLADKLPKSIQKSSSSNFIESNEKPSVSVSFDRLFGRQKPVHHILGGGQSADVLLWRNKRISGSVLAGATVIWMLFEWLNYHFLTLLCLAVVLSMTALFLWSNAAILINRSPPRMRPIALPKDIFVDAAIALSDQINRFLGFLQEVAIGRDVKTFLAVSAGLWFLAIIGSWCNLLTILYIGFVAAHTLPVLYERYEDQVDSFIYYILDEMKRHYGRFDSKVLRRIPKGPAKKGHKFQ*

Protein Length: 258

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCAGTCATCGACCTCTTTCAGAACTACTTACCCCTTAAAGGTCAAATACAACCATCGTGCCAACAGGTCCAAATCGACGGCAGAACGTTATTTCAGGGTTCTGATAAGGAGTCCACACGTTTCTCGCACTTCGCAGGTCGTTCTCGCGGCCTTCCTGCCATGGTTGATCAGAAAAAGTCCATAGGTCACGAGCAGCAAATGCGCGGAATAAATTTTCAAGGAAGCTTTGTGTTTTGACAATCGATCGTCATTTCCATCTTCTGCCTCAAGAAACAAAACGAAGGAACCTGGAATATCTTGAACAGACCGTCGAATCGGTTGCTTTGAGCAGTTTTCAGACGCCACTGAAATCTTTTCGGAAGCTTTGAAATACAAATCTGAAAGTAGCATTCGTTTTACAAATCAGAGACCAAGCCGTCTTAAAGACCTCTTTGTAGTTTCGATCAGGTTTACTAGAAATC_-_ATGGGGGAAAATTACGGAAAGGTAACTGCCGAAAATCTTCTGAACAATGTTATGGAAACACTTGCGGATAAACTCCCAAAATCCATCCAAAAATCCAGCTCGTCGAACTTTATTGAAAGTAACGAGAAACCTTCTGTATCTGTGTCATTCGACCGGCTCTTCGGACGCCAGAAGCCTGTGCATCATATACTCGGTGGAGGCCAATCTGCCGATGTCTTGCTATGGAGAAACAAGCGAATATCTGGCAGTGTTCTTGCAGGTGCCACTGTCATATGGATGCTCTTTGAATGGCTGAATTACCACTTCCTTACACTTCTTTGCCTCGCTGTGGTTCTCTCCATGACAGCTTTGTTCCTCTGGTCAAATGCCGCAATTTTAATCAACAGGTCTCCGCCAAGGATGCGCCCAATTGCTCTCCCTAAGGATATTTTCGTTGATGCTGCTATTGCTCTAAGTGATCAAATCAACAGATTTTTAGGGTTTCTACAAGAAGTTGCAATAGGAAGAGATGTGAAGACATTTCTGGCGGTCTCAGCAGGGCTATGGTTTCTTGCTATAATTGGCAGTTGGTGCAATCTCTTAACTATATTGTACATAGGGTTTGTTGCTGCACACACATTGCCTGTGCTGTATGAGAGATATGAAGACCAAGTGGACTCCTTTATTTATTACATATTAGATGAAATGAAGCGGCACTACGGGAGATTTGATTCCAAAGTTTTGAGAAGAATCCCAAAAGGCCCTGCGAAGAAGGGACATAAATTTCAGTAG___GTGGTAAATTGCAATGCGGGCATCCTGTGGCATATTTGTTATGAAGTTTCGATAGTCTATTTCTTACTTGCTAAGATGCTAGCAACATTTATTTGCACAATTGAGTGCAATTGGTTTACAGGAGACTTATAATGCCTTATTTTCTCAAGAACATTTACATCATATAGTTCAGGATGTCTGCGAAATGAGGAGGCTCTCTTCATGCATTGAATAGGGAAAAGCAACACTGCCAGTTGTTTGAAATGCTGCGTTCTTAACACAATATTAACGGTGCACCCTTGTAAATGTCCCGATTTTATTAAGTCTGAGAGAATGTTTGCTGGTAAAGTTTTTGGGCACATATAAACTTTGTTGGAGATATTGTTGATTTTGTTTGGGAGTCATTTTTAATCAGGAACTGGCTTGGTAGTTGTTCTAGTGAGTCATGTTCCATATTTGACAGATATGGGTTTCATTCTGATGTGAAATATATATCCCGAGTGTAAATCAATTCTAAAGAGATTAGTTGGTTACTTTCTTCATTCTTCTTGA

Fln Alignment:

sp_v1.1_unigene9466___AENLLNNVMETLADKLPKSIQKSSSSNFIESNEKP--------SVSVSFDRLFGRQKPVHHILGGGQSADVLLWRNKRISGSVLAGATVIWMLFEWLNYHFLTLLCLAVVLSMTALFLWSNAAILINRSPPRMRPIALPKDIFVDAAIALSDQINRFLGFLQEVAIGRDVKTFLAVSAGLWFLAIIGSWCNLLTILYIGFVAAHTLPVLYERYEDQVDSFIYYILDEMKRHYGRFDSKVLRRIPKGPAK
B8LPJ1______________AASFLDSVMEKVAEKLPGHDSSSSDSDD-EKSKKPESKKPEPSSISSSVKRLFGREKPVHTLFGGGKSADVILWRNKQTSAGVLAGATVMWLLFEWLGYYLLTLICHVLILGITILFVWSNASAFINKQPVRIPQISFSEQLFQDVASALRFEINRLFTVIHDVASGRDLKKFLMVVAGLWILSVIGSWANFLTLFYVAFVFAHTVPVLYEKYEDQVDAFTFKAMDEAKKHYGTFDAKVLSKIPRGPLK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
252			20	80	0.995493
254		20		80	0.995493
258		20		80	0.995493
259		20		80	0.995493
263	80		20		0.995493
265	80			20	0.995493
266	80		20		0.995493
271		20		60	0.99255
294	80	20			0.995493
295	80	20			0.995493
296		20	80		0.995493
298	75			25	0.996473
580	57			42	1.0
742		16		83	0.994512
883	85			14	0.993533
884	85			14	0.993533
885		14	85		0.993533
887	85	14			0.993533
888	14			85	0.993533
890		85		14	0.993533
892	14	85			0.993533
893		85	14		0.993533
894		85		14	0.993533
895	85		14		0.993533
897		14		85	0.993533
898	14			85	0.993533
900		85	14		0.993533
901		14		85	0.993533
1016	20		80		0.995493
1033	12	87			0.992554
1035	75		12	12	0.975346
1036			12	87	0.992554
1616	10			90	0.90298
1647	87			12	0.992554
1703	81		18		0.999994
1718	81			18	0.999994
1783		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain