SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9446

Length: 1198 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9446 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain-containing protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HSV4_POPTR	-	-	2.0e-32	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	set domain-containing protein	-	-	4.29253e-32	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	4.29253e-32	60%

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
384		75		25	1.0
490	20	80			0.995493
491		80	20		0.995493
493	80		20		0.995493
495	87	12			0.992554
499	87	12			0.992554
500		12		87	0.992554
501	12	87			0.992554
505		87		12	0.992554
506		87		12	0.992554
508			12	87	0.992554
542	85			14	0.993533
543			14	85	0.993533
545		85	14		0.993533
549		14	85		0.993533
552		14		85	0.993533
557	85			14	0.993533
564		85	14		0.993533
589	40			60	1.0
649		50		50	1.0
696	50		50		1.0
759		66		33	0.997452
760		66	33		0.997452
766		33		66	0.997452
769		33		66	0.997452
776		33	66		0.997452
778		33		66	0.997452
779		66	33		0.997452
781		33		66	0.997452
908	66		33		0.997452
933	33	66			0.997452
934		66	33		0.997452
935	33	66			0.997452
937	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain