SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9438

Length: 1567 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9438

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3353 domain containing protein	-	-	8.0e-10	20%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAY0

Fln msg:

Fln protein: MAILSMATVPNGGYENPLAGFKATLNRGHCTSLNNLSFRVRNPCTVMFASSRTRFIRWLPRNFRIVCTAASSAGGSSASNDENPYKVLGVNPIERFDVIKASYVRKYKDAEKRGDGAAMAQLERAYDKIMMAQLSNRKRGVTFGSIEVSKDIRYADKQPIVPWGPRYARSGKRDILINLAISTLFVGWMVYAGSADWKPMEFLIFGYIYRIFEKLKGFEAPVKASFSEDGEDESRGIQTGKRLLRTLALVFSCIAVSSVAYTGLLNVIEFAGLAIPRALINSQELFVTIASAITLFFMGSYYR*

Protein Length: 305

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAATATAAAGATTCAATTCTTCTTGTAATAGAATGAGATGAATTTATGGATCCCCATTTGTCTGTTTGCGACAGTTCAACTCAGGATATAGAGGCAAGGGGAGCTTTATCCCATCTCACCGCCAACGAATTAAGTGGATAATTGCAGTCAATTAGAATTTGGAAGTAAATTGGGTAGAAAGCTCTACGAGGTGGGCCGAAGGAAAGTTAGAAGGATAGCAAAAT_-_ATGGCAATATTATCAATGGCGACTGTGCCAAATGGTGGATACGAAAACCCTCTCGCAGGGTTTAAGGCAACTCTGAACAGAGGACACTGCACGTCTCTCAACAATTTATCATTTCGTGTTCGAAATCCATGTACCGTCATGTTTGCTTCCTCACGTACCAGGTTTATCAGGTGGCTGCCAAGGAACTTCAGGATAGTTTGTACTGCTGCATCTTCTGCAGGGGGATCAAGTGCAAGTAATGATGAGAATCCATATAAGGTCCTTGGTGTTAACCCAATAGAGAGGTTTGATGTGATCAAGGCTTCTTATGTAAGAAAATATAAAGATGCAGAAAAAAGAGGGGATGGGGCAGCTATGGCACAACTGGAGAGAGCATATGATAAGATAATGATGGCCCAACTTTCTAATCGCAAACGAGGCGTAACATTTGGTTCTATTGAGGTCTCTAAGGATATACGATATGCTGACAAGCAGCCAATAGTCCCTTGGGGTCCAAGGTATGCACGGTCTGGGAAAAGAGACATACTAATTAACTTGGCAATCTCAACATTATTTGTGGGTTGGATGGTTTATGCTGGTTCAGCAGATTGGAAACCCATGGAGTTTTTAATTTTCGGATACATATATAGGATCTTTGAGAAGTTAAAGGGTTTTGAGGCACCAGTAAAGGCATCATTCAGTGAGGATGGAGAAGATGAAAGCCGAGGGATTCAGACTGGAAAGCGCTTATTGCGTACTCTTGCACTCGTCTTCAGTTGCATCGCTGTTTCATCAGTGGCCTACACGGGGCTCCTCAACGTAATTGAATTTGCTGGGCTTGCCATTCCACGTGCTCTTATCAATAGCCAGGAACTATTTGTGACCATAGCTTCTGCAATCACGCTTTTCTTCATGGGTTCATATTACAGGTGA___TGATGTATGTAGGTTAGGCAACTAAGTTCTTTCTGAAACAACAGTGCTCCTTTGCCTGTTCACTTGTCTTCTGTTTATTCTTGAGGCATTAGAATTTAGCATGAGTATAAATAGCATTCAGTGTGCCGGTATCAAGTTGAAGGTTTGAAATCTTGTTGGCATCTAGTTTTGGCTGGTCTATCAGTGGAAAAACCATTCAATTTTTGTAAGACTTATGATAGTTCTTGATGGTTGTTTTAGTAAATTCATTTTCAGAATGTGTATATCAGGAGTATGGATGCCCCTTGGATATTGTATTCTGGGATGCCACATTCAGGAATGTTTATCTATGTCTTTAATCTTTGGTGAGGCTTATATTTATTGTTTTGAAGAAAATGCATTATAATTATTTGAATGCTACAAGAAA

Fln Alignment:

sp_v1.1_unigene9438___MAILSMATVPNGGYENPLAGFKATLNRGHCTSLNNLSFRVRNPCTVMFASSRTRFIRWLPRNFRIVCTXXXXXXXXXXXNDENPYKVLGVNPIERFDVIKASYVRKYKDAEKRGDGAAMAQLERAYDKIMMAQLSNRKRGVTFGSIEVSKDIRYADKQPIVPWGPRYARSGKRDILINLAISTLFVGWMVYAGSADWKPMEFLIFGYIYRIFEKLKGFEAPVKASFSEDGEDESRGIQTGKRLLRTLALVFSCIAVSSVAYTGLLNVIEFAGLAIPRALINSQELFVTIASAITLFFMGSYYR
D5AAY0______________MAILSMATVPNRGYENPVAGFKATLNRGHYASLNNLSFRVPNPCTVMFASSHTRFIRRLPRNFRIVCTAASSAGGSSASNDENPYEVLGVSPIERFDVIKASYTKKYKDAEKRGDGAAMAQLERAYDKIMMAQLSNRKRGVTFGSIEVSKDIRYADKQPIVPWGPRYARPGKRDIQINLAISTLLAGWMVYAGSADWKPMEFLIFGYIYRIFQKLKGFEAPVKTLLSEDGEDESRGIRTGKRLLRTLALVFSCIAVSSVAYTGLLNVIELAGFSIPRALINSQELFVTVSSAITLFFMGSYYR

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
343			61	38	1.0
665	27	72			1.0
697	27			72	1.0
943	60		40		1.0
955	83	16			0.994512
957			83	16	0.994512
960		16		83	0.994512
961		16		83	0.994512
962		83		16	0.994512
963	83			16	0.994512
965	83		16		0.994512
969			83	16	0.994512
970	83	16			0.994512
972	83	16			0.994512
973			83	16	0.994512
976	16	83			0.994512
1010	85		14		0.993533
1017		14		85	0.993533
1018		14		85	0.993533
1020		85		14	0.993533
1021	85		14		0.993533
1022			14	85	0.993533
1024	85			14	0.993533
1027		16	83		0.994512
1028	16		83		0.994512
1031	16			83	0.994512
1096		80		20	0.999996
1098	80		20		0.999996
1099			77	22	0.999999
1102	77	22			0.999999
1105	80		20		0.999996
1106			20	80	0.999996
1107		20		80	0.999996
1111		20	80		0.999996
1291	14		85		0.999981
1516	14			57	1.0
1520	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain