SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9435

Length: 511 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene9435
CGTCGTGACCTTGGCTGTCACTCAACTTCAAGGAGAGGCCTTACGATCCCTACAATGTTTACACCAGTCCTAACCAGGCTGTCCTCTGTCACGATTCCTACCAGAGCATGTACTCTCAACTGCTATGTGGCCTCCTTCAAAATAACGAGGTCCTAAGGATGGGAGCCGTCTTTGCTTCTGGATTCATCAGAGCTATACGCTTCCTCGAAGAGCACTGGAAACAATTTTGCCTCGACATAAAAACCGGCATTCTCAACACAGAGGTGACCGATCCATCAGTTAGAGAGGCCGTCGGGGAGCTTCTGCACCCGAACCCAGAGTTAGCTGATTTTATTGAAAGGCAATGTTCAACAGAATCTTGGCAAGGAATTATAACTCGGCTGTGGCCGAACACCAGGTACATCGATGTGATTGTGACTGGTGCAATGGCTCAATATATTCCTACTTTGGATTACTACAGCGGCGGGCTACCCCTGGTATGCACCATGTACGCTTCTTCCGAATGCTATTA

Ace file of the UniGene sp_v1.1_unigene9435

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GH3 family protein n=3 Tax=Malpighiales RepID=B9I058_POPTR	-	-	74%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	75%
Blast2go	gh3 family protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	86%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	86%
Blast2go	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GH3 auxin-responsive promoter	IPR004993	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 265 aas, your sequence is shorter than subject: 169 - 615

Fln protein: S*PWLSLNFKERPYDPYNVYTSPNQAVLCHDSYQSMYSQLLCGLLQNNEVLRMGAVFASGFIRAIRFLEEHWKQFCLDIKTGILNTEVTDPSVREAVGELLHPNPELADFIERQCSTESWQGIITRLWPNTRYIDVIVTGAMAQYIPTLDYYSGGLPLVCTMYASSECY

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCAAGGAGAGGCCTTACGATCCCTACAATGTTTACACCAGTCCTAACCAGGCTGTCCTCTGTCACGATTCCTACCAGAGCATGTACTCTCAACTGCTATGTGGCCTCCTTCAAAATAACGAGGTCCTAAGGATGGGAGCCGTCTTTGCTTCTGGATTCATCAGAGCTATACGCTTCCTCGAAGAGCACTGGAAACAATTTTGCCTCGACATAAAAACCGGCATTCTCAACACAGAGGTGACCGATCCATCAGTTAGAGAGGCCGTCGGGGAGCTTCTGCACCCGAACCCAGAGTTAGCTGATTTTATTGAAAGGCAATGTTCAACAGAATCTTGGCAAGGAATTATAACTCGGCTGTGGCCGAACACCAGGTACATCGATGTGATTGTGACTGGTGCAATGGCTCAATATATTCCTACTTTGGATTACTACAGCGGCGGGCTACCCCTGGTATGCACCATGTACGCTTCTTCCGAATGCTATTA

Fln Alignment:

sp_v1.1_unigene9435___SLNFKERPYDPYNVYTSPNQAVLCHDSYQSMYSQLLCGLLQNNEVLRMGAVFASGFIRAIRFLEEHWKQFCLDIKTGILNTE-VTDPSVREAVGELLHPNPELADFIERQCSTESWQGIITRLWPNTRYIDVIVTGAMAQYIPTLDYYSGGLPLVCTMYASSECY
Q4LAM0______________SQDFIERPYDPYNVYTSPMEAILCSDSYQSMYCQLLCGLAQNHEVLRVGAVFASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSKESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECY

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
71		87	12		0.992554
73	87		12		0.992554
77	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain