SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9385

Length: 1519 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9385

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDJ8_RICCO	-	-	41%
FL-Next	sp=Flap endonuclease GEN-like 1; Oryza sativa subsp. japonica (Rice).	-	-	38%
Blast2go	dna binding	-	-	55%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.1.-.-.	-	0.0	55%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	55%
Blast2go	single-stranded DNA binding	GO:0003697	Molecular Function	55%
Blast2go	flap endonuclease activity	GO:0048256	Molecular Function	55%
Blast2go	double-stranded DNA binding	GO:0003690	Molecular Function	55%
Blast2go	nucleus	GO:0005634	Cellular Component	55%

Source	InterPros	Term	Type	Identity
Blast2go	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	55%
Blast2go	XPG/RAD2 endonuclease	IPR006086	-	55%
Blast2go	Helix-hairpin-helix motif, class 2	IPR008918	-	55%
Blast2go	5'-3' exonuclease, C-terminal domain	IPR020045	-	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q64MA3

Fln msg: your sequence is shorter than subject: 481 - 629

Fln protein: CVELLELMGMPVLRAKGEAEALCAQINREGWVDACITVDSDAFLHGAKCIIKCLQADCKEPIIECYRASDIDMILGLKRKHLIALALLVGCDYNARGVPGIGLNTAVSIVRLFKEDEILNKLRDLGKGNASSPSEMDTSVLNYVEPELPGDMHTKREHHCSHCGHLGKKRDHMRLGCEACKTLYNEERCVEKSQGFKCECSGCLQEKKRKEHKKSLDWQTKIFSKIRATDGFPNEEIVDIFLGQETTGLPDQQKFVNFFSWKAPQMELLEDFLEHHLYWHRSYTRQKILPLCSMLLLRDMAASKAGSNAQEKNWTLYNRYTPHSIERVKFSYSRSFYVLKWKYVNSESSDDDWLGLKAKAFQQQKEKVSEVQKTHGELDEDDSAMEVEALEGSLFITTDEDIKLLRSACPELVDKFQHEKTVKGRNKSVSKGKKRKATSTGKQLNITSYFKSTKGPVMSKHQEYQLICEVTRREVLVLLI*

Protein Length: 482

Fln nts: TGTGTGGAGCTGTTGGAACTTATGGGAATGCCAGTTTTAAGAGCAAAGGGTGAGGCTGAAGCACTTTGTGCACAGATAAATAGAGAAGGCTGGGTGGATGCTTGTATTACAGTTGATAGTGATGCATTTCTTCATGGAGCTAAATGCATAATAAAGTGTCTCCAAGCAGATTGTAAAGAGCCCATCATAGAATGCTATAGGGCATCTGATATTGATATGATTCTTGGTTTGAAGAGGAAGCATCTAATAGCCCTGGCATTATTGGTAGGTTGTGACTATAATGCACGCGGTGTACCAGGAATTGGGCTTAACACTGCAGTGAGCATAGTCCGCTTATTCAAGGAGGATGAGATTCTGAACAAGCTTCGTGATTTAGGCAAGGGGAATGCATCATCACCTTCAGAGATGGATACATCAGTATTGAACTATGTTGAACCAGAACTTCCTGGTGACATGCACACTAAAAGAGAGCACCATTGTTCTCATTGTGGGCACTTGGGGAAGAAAAGAGATCATATGAGGCTTGGTTGTGAGGCTTGCAAGACCCTTTACAATGAAGAAAGGTGTGTAGAAAAATCTCAAGGATTCAAGTGTGAATGTTCAGGCTGCCTGCAGGAGAAGAAGAGAAAGGAACATAAGAAATCCCTGGACTGGCAAACAAAGATTTTTTCTAAAATTCGTGCCACTGATGGATTTCCAAATGAAGAAATTGTTGATATATTTCTTGGTCAAGAAACCACAGGCCTTCCTGATCAGCAAAAGTTTGTGAATTTTTTTTCTTGGAAAGCCCCTCAAATGGAACTTCTTGAAGACTTCTTAGAACATCATTTGTACTGGCATCGATCATACACACGCCAAAAAATCCTCCCTCTATGCTCTATGTTGCTTCTGAGGGATATGGCTGCAAGTAAGGCAGGGTCGAATGCACAAGAAAAAAATTGGACTTTGTATAATAGATACACTCCACATTCCATTGAACGTGTTAAATTCaGTTACTCCCGATCCTTTTATGTGCTGAAATGGAAATATGTAAATTCAGAGTCCAGTGATGATGACTGGTTAGGCTTGAAGGCTAAAGCATTCCAGCAGCAGAAGGAAAAGGTCTCTGAGGTTCAGAAAACTCATGGTGAATTAGATGAAGATGACAGTGCAATGGAGGTTGAGGCACTTGAAGGATCTCTATTCATAACTACAGATGAAGACATCAAGCTTCTTAGGTCTGCATGTCCTGAGCTGGTGGATAAATTTCAGCATGAAAAGACTGTAAAGGGAAGGAACAAGTCAGTATCCAAAGGAAAGAAGAGGAAAGCGACCTCCACTGGAAAGCAACTCAATATTACATCATATTTTAAGTCTACGAAAGGGCCAGTTATGTCAAAACATCAGGAATATCAGCTAATCTGCGAAGTAACCAGGAGGGAAGTGTTAGTGTTGTTGATTTGA___CCATTCCACTTGAAAAATCAACAGAAATCATGAACACTCCATTAGCTGGATCAACCAATCAAGATATCATTGACAT

Fln Alignment:

sp_v1.1_unigene9385___CVELLELMGMPVLRAKGEAEALCAQINREGWVDACITVDSDAFLHGAKCIIKCLQADCKEPIIECYRASDIDMILGLKRKHLIALALLVGCDYNARGVPGIGLNTAVSIVRLFKEDEILNKLRDLGKGNASSPSEMDTSVLNYVEPELPGDMHTKREHHCSHCGHLGKKRDHMRLGCEACKTLYNEERCVEKSQGFKCECSGCLQEKKRKEHKKSLDWQTKIFSKIRATDGFPNEEIVDIFLGQETTGLPDQQKFVNFFSWKAPQMELLEDFLEHHLYWHRSYTRQKILPLCSMLLLRDMAASKAGSNAQEKNWTLYNRYTPHSIERVKFSYSRSFYVLKWKYVNSESSDDDWLGLKAKAFXXXXXXXXXXXXTHGELDEDDSAMEVEALEGSL-----------------------FITTDEDIKLLRSACPELVDKFQHEKTVKGRNKSVSKGKKRKA--------TSTGKQLNITSYFKSTKG
Q64MA3______________CVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVIKVLRSNCKEP-FECYNMADIESGLGLKRKQMVAMALLVGSDHDLHGVPGFGPETALRFVQLFDEDNVLAKLYEIGKGVYPFIGVSAPNIDDLPSPSTK-SLPRARSPHCSHCGHPGNKKNHIKDGCNFC-LVDSLENCVEKPAGFICECPSCDKARDLKVQRRNENWQIKVCKRIAAETNFPNEEIINLYLNDDNL---DNENGVPLLTWNKPDMEILVDFLSFKQNWEPAYIRQRMLPMLSTIYLREMASS------QSKSFLLYDQYKFHSIQRIKIRYGHPYYLVKWKRVTRSMISNDPPSKQTELEGKNDKVEV--------LDGDDEVVDEEEEEPTMISETTELLDEPDVPQVLDDDKDCFLLTDEDIELVNAAFPDEAQRFQEEQRLKEAKSIARKSKLNVAGFETPKGPRPSGVQLSIKEFYRSKKG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
717		33		66	0.997452
994		66		33	0.997452
1113	33		66		0.997452
1267	66			33	0.997452
1268		66	33		0.997452
1274	66			33	0.997452
1276	33		66		0.997452
1277	33		66		0.997452
1278	33		66		0.997452
1280	66			33	0.997452
1281			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain