SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9358

Length: 1387 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9358

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S411_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	wd40 repeat compass complex protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	histone H3-K4 methylation	GO:0051568	Biological Process	80%
Blast2go	histone methyltransferase activity (H3-K4 specific)	GO:0042800	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	MLL1 complex	GO:0071339	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	80%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	80%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	80%
Blast2go	WD40-repeat-containing domain	IPR017986	-	80%
Blast2go	WD40 repeat, conserved site	IPR019775	-	80%
Blast2go	WD40 repeat, subgroup	IPR019781	-	80%
Blast2go	WD40 repeat 2	IPR019782	-	80%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg:

Fln protein: MAESQGPSTHYKPYSERQTLIGHSAAVSCVKFSKDGRLLGSASLDKTICIWSASASSSTSAFKRELRGHSDGVSDFAWSSDARYICSASDDKSLRIWDVHTGDCVKTLKGHTSMVFCVNFNPQSNLIVSGSFDETLRIWDVKTGKCQKIIPAHTDPITAVHFNRDGSLIVSSSRDGSCKIWDSATGACLKTLIDDKTPAVSFVEFSPNGKFILAATLDDTLKLWNYSTGKIMKTYTGHTNRVYCMTSTFSVTNGKYIVSGSEDCCVYLWDLQGKNMVQRLEGHTDTVISVSCSPIENKIASGALGNDRTVKLWVQDK*

Protein Length: 319

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGACGAACAAAATCCCTGTCCAAATAACAAGAAAA_-_ATGGCAGAGTCACAGGGGCCGTCGACACATTACAAACCTTACAGCGAGAGGCAGACTCTCATAGGCCACAGCGCAGCGGTCTCGTGCGTGAAATTCTCGAAGGACGGGCGTCTCCTGGGCAGCGCTTCCCTAGACAAAACAATATGCATATGGTCGGCCTCTGCTTCTTCTTCTACCTCTGCATTCAAGCGGGAGCTCCGCGGCCACAGCGACGGCGTCTCCGACTTCGCGTGGTCGTCCGACGCCCGCTATATCTGCTCGGCTTCTGACGACAAGAGCCTCCGCATCTGGGACGTCCACACGGGCGATTGCGTTAAGACCCTCAAGGGCCACACCAGCATGGTCTTCTGCGTCAACTTCAATCCCCAGTCCAATCTCATCGTCTCCGGCTCCTTCGACGAAACCCTCAGGATTTGGGACGTCAAGACCGGGAAATGCCAAAAGATCATACCTGCACACACCGATCCCATCACGGCTGTTCATTTCAACCGTGACGGATCGCTCATCGTCTCCAGCAGCCGTGATGGCTCCTGCAAGATCTGGGATTCTGCAACTGGGGCTTGTTTGAAGACCCTCATTGACGACAAAACTCCTGCAGTTTCCTTCGTCGAATTTTCTCCCAATGGGAAATTCATTCTGGCTGCCACCCTGGATGACACATTGAAGCTGTGGAACTACTCAACAGGCAAGATTATGAAAACATACACTGGTCACACCAATAGGGTGTACTGCATGACTTCGACATTTTCTGTGACAAATGGAAAATACATTGTCAGTGGTTCTGAGGATTGTTGTGTGTATCTTTGGGACCTTCAGGGTAAGAACATGGTTCAAAGGTTGGAAGGTCATACAGACACTGTTATCTCTGTTTCTTGTAGTCCCATTGAAAATAAGATTGCTTCTGGTGCTTTGGGCAATGATAGAACTGTAAAGCTTTGGGTTCAAGATAAGTAA___TTGTGGGAGCACCATGTTGTGCATATGTATTGTAAATTTCTTCTGCTACTGGAAGATAAAATGTTGAACGCTCAGAAGGCTGTTGTGTTTATCTGTGCATTCCAAAGAGAGACTTATAGTTAGGTCACATTGACTGCTATCTTTCCTCCAGTAACTCTATTGAGTTGATCACTTTTTGTGCTTTAGAAAACGAGGAATATGGGTTCAATTTCCGAATCTGTATCCTGTGTTTAATATTTCAATAATTTTCTTCACACGATTTTGTTTGGAGAGAAGAATTTAGTTATTTTGATCTGGATAGACGTGAAAGTTATAACCAGAGTGCTCTTTATCTTTTAGAATAGTTTGAATGAAAAGAAAATTGATTTTATTGTAC

Fln Alignment:

sp_v1.1_unigene9358___AESQGPSTHYKPYSERQTLIGHSAAVSCVKFSKDGRLLGSASLDKTICIWXXXXXXXXXXFKRELRGHSDGVSDFAWSSDARYICSASDDKSLRIWDVHTGDCVKTLKGHTSMVFCVNFNPQSNLIVSGSFDETLRIWDVKTGKCQKIIPAHTDPITAVHFNRDGSLIVSSSRDGSCKIWDSATGACLKTLIDDKTPAVSFVEFSPNGKFILAATLDDTLKLWNYSTGKIMKTYTGHTNRVYCMTSTFSVTNGKYIVSGSEDCCVYLWDLQGKNMVQRLEGHTDTVISVSCSPIENKIASGALGNDRTVKLWVQD
A9NPC1______________SEAQGSGNSFKPYKLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSA----KRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIWVQE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
116	16	83			0.994512
118		83	16		0.994512
119	83		16		0.994512
120			16	83	0.994512
257		83		16	0.994512
688	88	11			0.999952
689			11	88	0.999952
692	88		11		0.999952
694	11			88	0.999952
702		88		11	0.999952
1027		86		13	0.999973
1061	45	54			1.0
1125		76		23	1.0
1140	9	90			1.0
1204	14		85		0.999981

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain