SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9344

Length: 1038 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9344

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced-related / indole-3-acetic acid induced-related-like n=3 Tax=Oryza sativa RepID=Q5JM48_ORYSJ	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	auxin-induced-related indole-3-acetic acid induced-related-like	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Galactose-binding domain-like	IPR008979	-	0.0	80%
Blast2go	NADH:ubiquinone oxidoreductase intermediate-associated protein 30	IPR013857	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8S8

Fln msg:

Fln protein: MSRLRALWQAASNATKKAFSWKFEDLAPPSELCIFNFQTKDDLRRWKLYADSEHGGLSSASLEIKGTDEQATGVFSGNLFTDMSQDSRRVMNRSGFCGMRSTQLEGYLDLDPYDTLALRVRGDGRCYISTIHTENWVNVPGTTENNTWQAFVFIPKDYWYVARIPLSRYLPTWRGNVMDSQLEMNPSRIVAMSLSVNAEGGPPGAVTGPGEFRLELDWIKALRTL*

Protein Length: 227

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACCTGCGCGTGTGAGAATGCAGAGTAGCTCCCACCCGAGTCACAGCAAACACAAGACTTAATACTATCTACTAATATCAGAGCCTGAAATCAAGTGAACATAATTGGAG_-_ATGTCTAGGCTGCGAGCACTGTGGCAAGCTGCCTCTAACGCCACAAAGAAAGCATTCTCATGGAAGTTTGAAGATCTAGCCCCACCTTCCGAGCTATGCATATTTAATTTCCAAACAAAGGATGATTTAAGAAGATGGAAATTGTATGCTGACTCTGAGCATGGTGGTTTATCCTCTGCTTCCTTGGAAATTAAAGGCACTGATGAACAAGCAACTGGTGTTTTCTCAGGTAACCTATTTACAGACATGTCACAAGACTCCAGACGGGTAATGAATCGTAGTGGGTTTTGTGGGATGCGATCTACACAGCTTGAAGGCTACCTTGATTTGGACCCATACGATACGTTAGCTTTACGGGTTAGAGGAGATGGACGCTGCTACATATCAACTATACATACAGAGAACTGGGTTAATGTGCCTGGCACAACAGAAAACAATACTTGGCAAGCCTTTGTCTTCATACCTAAAGATTATTGGTATGTAGCTAGGATTCCTCTTTCCCGTTATTTGCCAACATGGAGAGGGAATGTTATGGATTCACAGCTTGAGATGAATCCTTCACGTATTGTTGCAATGTCACTATCAGTTAATGCAGAAGGTGGCCCACCAGGAGCTGTTACTGGACCAGGTGAATTCAGACTTGAATTGGACTGGATTAAGGCCTTGAGAACACTTTGA___AGTTTATATCAAAGTTTTTAAGGGCCCACACTTTTGAGAGTTTGATTACACAACTTAGCAAGATATGTAACATAGCTGTAGGGTCCTTACATATAGATTTAACATAGATTGATACCTTGAAACTCATTTTATTATGGAAAAACTTATATGTAGAAGCTATTTATTCAATAATCAACTAGCATCTAATTAAGGCAGTTTTTCAAGTCCACGCAGTGAGTCACAGGCC

Fln Alignment:

sp_v1.1_unigene9344___MSRLRALWQAASNATKKAFSWKFEDLAPPSELCIFNFQTKDDLRRWKLYADSEHGGLSSASLEIKGTDEQATGVFSGNLFTDMSQDSRRVMNRSGFCGMRSTQLEGYLDLDPYDTLALRVRGDGRCYISTIHTENWVNVPGTTENNTWQAFVFIPKDYWYVARIPLSRYLPTWRGNVMDSQLEMNPSRIVAMSLSVNAEGGPPGAVTGPGEFRLELDWIKALRT
D5A8S8______________MSRLRALWQAASNASKKALSWKLEDLAPPTELCIFSFQTKDDLRRWNLYADSEYGGLSSASLEIKGTDKQATGVFSGNLFTDMSQDSRRVMNRSGFCGMRSTQFEGYLDLDPYDTLALRVRGDGRCYISTIHTENWVNMPGRTENNTWQAFVFIPKGYWYVARIPLSRYLPTWRGNVMDSKLEMNPSRIVGMSLSVNAEGGPQGAVIGPGEFRLELDWIKALRT

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
48	50	25		25	0.995533
53			75	25	0.996473
55	75		25		0.996473
59		75	25		0.996473
60		75		25	0.996473
64		25		25	0.995533
66	25	75			0.996473
112	80	20			0.995493
115		80		20	0.995493
116		80	20		0.995493
119	80		20		0.995493
121	80	20			0.995493
122	80			20	0.995493
124	20		20		0.99255
125		80	20		0.995493
126	80	20			0.995493
127	80			20	0.995493
130		20	80		0.995493
133	80			20	0.995493
383			14	85	0.993533
384			14	85	0.993533
439	88			11	0.923564
440		11		88	0.923564
442		88		11	0.923564
445		11		88	0.923564
448	88			11	0.923564
449		88	11		0.923564
450	88		11		0.923564
452	88			11	0.923564
455	11			88	0.923564
456		11		88	0.923564
457			88	11	0.923564
458	88	11			0.923564
550			11	88	0.923564
551			88	11	0.923564
552		11	88		0.923564
555			11	88	0.923564
557	88	11			0.923564
558		11		88	0.923564
559			88	11	0.923564
562		88	11		0.923564
566			88	11	0.923564
570	90		10		0.90298
571	90			10	0.90298
576	90			10	0.90298
577	90		10		0.90298
583	90		10		0.90298
584		90	10		0.90298
585		10		90	0.90298
588			90	10	0.90298
591	90	10			0.90298
592			90	10	0.90298
606	90		10		0.90298
607		90	10		0.90298
610	90		10		0.90298
611	90			10	0.90298
612	90	10			0.90298
613	10		90		0.90298
614	88	11			0.923564
616		11		88	0.923564
960	57	42			1.0
1020	16			83	0.994512
1021	20			80	0.995493
1022	20			80	0.995493
1023	20	80			0.995493
1029		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain