SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9343

Length: 1938 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9343

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mevalonate kinase n=1 Tax=Hevea brasiliensis RepID=Q944G2_HEVBR	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	mevalonate kinase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mevalonate kinase.	EC:2.7.1.36	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Terpenoid backbone biosynthesis	00900	75%
Blast2go	Biosynthesis of terpenoids and steroids	01062	75%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	75%
Blast2go	Biosynthesis of plant hormones	01070	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	mevalonate kinase activity	GO:0004496	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	GHMP kinase, ATP-binding, conserved site	IPR006203	-	75%
Blast2go	GHMP kinase N-terminal domain	IPR006204	-	75%
Blast2go	Mevalonate kinase	IPR006205	-	75%
Blast2go	Mevalonate/galactokinase	IPR006206	-	75%
Blast2go	GHMP kinase, C-terminal domain	IPR013750	-	75%
Blast2go	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	75%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQZ1

Fln msg: Overlapping hits, possible frame ERROR between 1466 and 1387,

Fln protein: MDNIKEVAGRAPGKLILCGEHAVVHGSTALAASLGLYTQVRIQTSTAATDPDGHLTIDLRDVNVHLKWPIKRIEAAFKPLEEFVVDPLCVKSCSSDIMQCIASLVNEEEFPEAVIGVSTGVSAFLFLYVSIVGFKPATVIVSSDLPLGSGLGSSAAFCVAVSSAVLALSGALDLDVLQGGWLSFKQSYREIVNKWAFEGEKIIHGRPSGIDNTVSAYGNMVKFKSGHLTHIEHIFPIRMLITNTKVGRNTKALVAGVAERASRHPKAMSAVFDAVNAISEEMADIMQAPFSDDVSICAQEGKLEELMEMNQGLLQCMGVCHPAIKAVLQTxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGKMIEKVKVDLESQGFQCFLATIGGEGVQVSFQCSST*

Protein Length: 398

Fln nts: AGATGAACCCCATGTTCAAAGATACCCAGGATGCCCATTACGTTAATAAACGTGTACCCCGAAAGTATTTAAaGTCctgAacTATtgCTGactgaCcAGTCATAAATGGCGtCTgAaGTctACAGTATCTTTAATTTGCTTGTTTCTTTTGCTCCGTGACACCTGCTAAGCACGAGGTGGGTGACATTCAAGTCTGTAGACTGCATTAGACCACCCGTAAATAAAAACAGAAAAGTTCAAAATACAACTGCGTGCGTTGACCAGAGAAACATGGACTTTGGGCAGCATTCTCCCAGAATTACCAAGTATCTGAATTTTGTTTATTAGGAAGTACAGAGGTCTGACGATCAGAGCCTGGATTTGGGTTTGCATATTTTGAATTGGGTTTGCAAAAT_-_ATGGATAACATCAAAGAAGTAGCAGGGCGAGCGCCTGGTAAACTTATATTGTGTGGAGAACATGCAGTGGTACATGGATCCACTGCTCTAGCTGCTTCTCTGGGCCTCTACACACAAGTCCGGATTCAGACTTCCACAGCTGCAACAGACCCAGATGGACATTTGACTATTGATTTGAGAGACGTGAATGTGCATTTGAAATGGCCAATCAAGAGGATAGAGGCTGCTTTTAAGCCGTTGGAAGAATTTGTTGTCGATCCTCTCTGTGTCAAATCTTGTTCGTCAGACATTATGCAGTGCATTGCATCCCTTGTGAATGAAGAAGAATTCCCAGAAGCTGTAATTGGCGTTTCCACTGGAGTTTCAGCTTTTTTATTTCTCTACGTCTCCATTGTTGGGTTTAAACCGGCCACAGTAATTGTGAGTTCAGACTTACCTCTAGGTTCTGGATTGGGATCCTCTGCTGCCTTTTGCGTGGCAGTATCGAGTGCTGTGCTTGCTTTATCTGGTGCACTAGATTTGGATGTTCTCCAAGGGGGTTGGTTGAGTTTCAAACAGAGCTATCGGGAGATAGTAAACAAGTGGGCTTTTGAAGGAGAGAAAATCATCCATGGTAGACCTTCAGGCATTGACAACACAGTTAGTGCATATGGAAACATGGTGAAGTTTAAGTCTGGTCACCTGACACATATCGAGCATATCTTCCCTATCAGGATGCTTATAACTAATACAAAGGTTGGAAGAAATACTAAAGCATTAGTTGCTGGGGTTGCTGAGAGGGCATCAAGGCATCCAAAGGCAATGAGTGCAGTATTTGATGCAGTTAATGCTATCAGTGAGGAGATGGCAGATATTATGCAGGCTCCCTTTTCAGATGATGTATCTATATGTGCACAGGAAGGAAAGCTGGAAGAACTCATGGAGATGAATCAAGGGTTACTGCAGTGCATGGGTGTTTGTCATCCTGCCATCAAAGCAGTACTCCAAACCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTGGCAAGATGATCGAGAAAGTGAAAGTTGACTTGGAGTCTCAAGGATTCCAGTGCTTTCTAGCAACAATTGGAGGTGAAGGAGTCCAAGTTTCCTTCCAATGCTCTAGCACATAA___ATTTCTTGAGCAAGTGACGGGTGTGTTTTTAGTCTATTATTTGTGGTCAACTTTGGATGATTACTGGCTTTTCTTCTTTTGTCAGCTTTCTCCAATGAGAGGAAAAGTTCGAAGCTCGAACATATTTAGCATAGATGTTCAGAAATATCAGCACATAGCTTGAGCATTTTGTAAAGGCCATCGTACTGATTTTGTCATGACATGACTTTACTGCTCTTGATTAATTTTTAATTATGTTACTGATCGTTATTTCATTATGAACTACATATGCAAGCCTTTTATCATGTATCCATCATGAGCTTGATGTCTGGGATTCTGTTTGCAGATAACAAGAGAATGTTTAATCCCTCTCGG

Fln Alignment:

sp_v1.1_unigene9343___MDNIKEVAGRAPGKLILCGEHAVVHGSTALAASLGLYTQVRIQTSTAATDPDGHLTIDLRDVNVHLKWPIKRIEAAFKPLEEFVVDPLCVKSCSSDIMQCIASLVNEEEFPEAVIGVSTGVSAFLFLYVSIVGFKPATVIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGGWLSFKQSYREIVNKWAFEGEKIIHGRPSGIDNTVSAYGNMVKFKSGHLTHIEHIFPIRMLITNTKVGRNTKALVAGVAERASRHPKAMSAVFDAVNAISEEMADIMQAPFSDDVSICAQEGKLEELMEMNQGLLQCMGVCHPAIKAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGKMIEKVKVDLESQGFQCFLATIGGEGVQVSFQCSS
C0PQZ1______________MDNIKEVAGRAPGKLILCGEHAVVHGSTALAASLGLYTQVRIQTPTAETDPDGHLTIDLRDLNVLLQWPIQRIEAAFKPLEEFVVDPLCVKSCSSDIMQCIASLVNEEDFPEAVFGVSTGVSAFLFLYISIVGFKSATVIVSSDLPLGSGLGSSAAFCVAVSGALLALSGALDLDALQGSWLSLKQNNREIVNKWAFEGEKIIHGRPSGIDNTVSAYGNMVKFKSGHLTHIEHIFPIRMLITNTKVGRNTKALVAGVAERASRHPKAMSAVFDAVNAISEEMADIIQAPFSDDASISAQEGKLEELMEMNQGLLQCMGVCHPAIKAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSSKMIEKVKVDLESQGFQCFLATIGGEGVQVSFQCTS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
635		25		75	0.996473
639	75	25			0.996473
640			75	25	0.996473
641	75			25	0.996473
642	75		25		0.996473
643			25	75	0.996473
644		25		75	0.996473
648	25			75	0.996473
649		25	75		0.996473
652	25		75		0.996473
660		75	25		0.996473
663		25		75	0.996473
726		60		40	1.0
1089		82		17	1.0
1240	91		8		0.999807
1335	78		21		1.0
1402		78		21	1.0
1766		72	27		1.0
1791	16		83		1.0
1843		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain