SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9338

Length: 602 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9338 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=E3 ubiquitin-protein ligase XB3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	40%
Blast2go	ring zinc finger ankyrin protein	-	-	2.69816e-27	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	2.69816e-27	54%
Blast2go	ligase activity	GO:0016874	Molecular Function	2.69816e-27	54%
Blast2go	binding	GO:0005488	Molecular Function	2.69816e-27	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	2.69816e-27	54%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	2.69816e-27	54%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
392		83		16	0.994512
504	16	83			0.994512
506		83	16		0.994512
508		16		83	0.994512
509	16			83	0.994512
510		83	16		0.994512
511		16		83	0.994512
512		16		83	0.994512
515	83		16		0.994512
516			16	83	0.994512
520	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain