SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9316

Length: 2118 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9316
ATGGGGGGAAGGTTGAGGGCATTCCACAGCTTTTATTGTACACATATACCTTCTGGCGGTGAACTGAGAGGAGAATGGTATTTAAGTTCACCGGATTCCTCATCTTCCCTCAAAATTTCCCGTCTGATCTGTAAAGGATTTCGAATTTCACAGAGCTGAAACATCGACTGTCAGCACTCGGCTCGGGGTTATTGTAATTAAGGTTTCTTACAAACGAGCGGACTGATCGGCTTCGATTTAGGCGATTTTGGGATTTGTTGGAGAAGATACTTGCCAAAGAAATGGAAGAATGCTGTGCTGTCTGTGCTGAACCACTGGAGTGGTTGGCATATGGGCCATGTGGCCACCGTGAAGTCTGCTCTACTTGCACCTCAAGGCTGCGGTTTATCCTTAATGACAAAAATTGTTGCATCTGTAAACAAGAATGTCCTAGTGTAGTGATAACTAAGGCTCTAGGAGACTACACAAATGCAGTAAGGGATTTTAGTACCCTACCAGCTCCAGCAAATGAGGGAAAAGCAGGCAACTATTGGCTTCATTTAGACACACAAGCGTATTTTGATGATGAGCAACATTACAAAATGATCAAAGCAATGTGCAGGTTGAGCTGCAGTGTTTGTGACAATACTTGTGGGGCTCAAGAGCCAAGGAAAGAGTTACCAAAGCATCACCGAGAGTTTAAACATAGAGATCAGTTGAGGAAGCACTTATTTTATGCACACAAGCTTTCTATGTGCACCTTATGCCTGGAAGGCCGAAAGGTATTTATTTGTGAACAGAAGCTTTATACACGGTCGCAGCTAGACCGACATTTATCTAGAGGAGACTCTGAAGTGGATGGCAGTGAGATAGAAAGGGGAGGTTTCATGGGTCATCCAATTTGTGACTTTTGCAGGAAACGATTTTATGGAGATAGTGAACTTTATGTGCACATGTCAAGAGATCATTATACTTGCGACATATGCCAAAGAAGGCACCCTGAGCACTCTGAGTATTATCAGAATTACAGTGATTTAGAGGCACACTTTAGTCAAGAACACTTCCTATGTGAAAATGATGATTGCATGGCAAAAAAGTTTGTTGTCTTTGCATCTGAAGCAGAGTTGAAGAGGCATAATGCAATTGAGCATGCTGGAAATATGTCCCGGTCTCAACGGAATGCTGCACTGCAAATTCCTGTTAGTTTTCAATATTGGCGTCCAGGGAGTGAGCGTGAGTCTCAACGAGTTGCCAGAGGACGAGGGAGGAACATGAATAGTTCGCTTTCTTCAGCTAACAGCAGTGACATGCTTGACATGGTAGCAAGTTCTTCCACAAGTACTGTATCAACTGATCCTCCCAGGTATCTCACTGCAGTGAGTAGGAGAGCACTTAACTCACCTCTTGAAGAATCTGCCTTTCCTCCCCTTCCCGGGGCATCAGAAACTGATCCTCCCAAGTATCCCACTGCAGTGAGTAGGAGAGCACTTAACTCCCCTCTTGAAGAATCTGCCTTTCCTCCTCTTCCTGTGGCATCAGGAAATGCTTCACATAAATCTATGAACAAAGGAAAGAGATCAGTTAAGTCTATGGCTGCACTTGTACGTGGTCAAAATCTTGGCCCATGCCAGACAAGCAATGCACCTTTGCTTAGTATTGAGGAAGTGCGTGCTGCAAACAAGGAATTAATTGAAAGTATTCAATCAGGTTTGGGAGGCAATGAGCAGAAATTCGTTGCATTTAAAGATGTTTCTTCTCGGTTTCGAAATGGGGATATTGGTGCTCGAAAATATTATTTACATATATCAAAGCTGGGTTTGTCACATATTGTACCTCAGCTTGCAAAGTTATGTCCTGACCAAGACAAGGGAAGAAAACTGCTAGAGGCTCATGAAGCTATGGGAAAACTATCGGAGATGAAATTCTAGTTTGGCTTCTTTAAGCTATTTAAATGATATGCTAATTATGACCAACACAAACTCAAAATCATCCTAGAGTTGATGTGGTCATTTATAAGTGCATATATGTGTGACACAACTACTACAACATTGTAGCTACTCACTTGTGCATTTGATCACATGGTAATAATGGATTTTGAACATATATCTTTGGTAATTGTTACATATATTTAATTTGAGA

Ace file of the UniGene sp_v1.1_unigene9316

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (C2H2 type) family protein	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	54%
Blast2go	protein	-	-	64%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	64%
Blast2go	Zinc finger, C2H2	IPR007087	-	64%
Blast2go	Zinc finger, C2H2-like	IPR015880	-	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HZD9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 208 aas, your sequence is shorter than subject: 542 - 818

Fln protein: MEECCAVCAEPLEWLAYGPCGHREVCSTCTSRLRFILNDKNCCICKQECPSVVITKALGDYTNAVRDFSTLPAPANEGKAGNYWLHLDTQAYFDDEQHYKMIKAMCRLSCSVCDNTCGAQEPRKELPKHHREFKHRDQLRKHLFYAHKLSMCTLCLEGRKVFICEQKLYTRSQLDRHLSRGDSEVDGSEIERGGFMGHPICDFCRKRFYGDSELYVHMSRDHYTCDICQRRHPEHSEYYQNYSDLEAHFSQEHFLCENDDCMAKKFVVFASEAELKRHNAIEHAGNMSRSQRNAALQIPVSFQYWRPGSERESQRVARGRGRNMNSSLSSANSSDMLDMVASSSTSTVSTDPPRYLTAVSRRALNSPLEESAFPPLPGASETDPPKYPTAVSRRALNSPLEESAFPPLPVASGNASHKSMNKGKRSVKSMAALVRGQNLGPCQTSNAPLLSIEEVRAANKELIESIQSGLGGNEQKFVAFKDVSSRFRNGDIGARKYYLHISKLGLSHIVPQLAKLCPDQDKGRKLLEAHEAMGKLSEMKF*

Protein Length: 543

Fln nts: ATGGGGGGAAGGTTGAGGGCATTCCACAGCTTTTATTGTACACATATACCTTCTGGCGGTGAACTGAGAGGAGAATGGTATTTAAGTTCACCGGATTCCTCATCTTCCCTCAAAATTTCCCGTCTGATCTGTAAAGGATTTCGAATTTCACAGAGCTGAAACATCGACTGTCAGCACTCGGCTCGGGGTTATTGTAATTAAGGTTTCTTACAAACGAGCGGACTGATCGGCTTCGATTTAGGCGATTTTGGGATTTGTTGGAGAAGATACTTGCCAAAGAA_-_ATGGAAGAATGCTGTGCTGTCTGTGCTGAACCACTGGAGTGGTTGGCATATGGGCCATGTGGCCACCGTGAAGTCTGCTCTACTTGCACCTCAAGGCTGCGGTTTATCCTTAATGACAAAAATTGTTGCATCTGTAAACAAGAATGTCCTAGTGTAGTGATAACTAAGGCTCTAGGAGACTACACAAATGCAGTAAGGGATTTTAGTACCCTACCAGCTCCAGCAAATGAGGGAAAAGCAGGCAACTATTGGCTTCATTTAGACACACAAGCGTATTTTGATGATGAGCAACATTACAAAATGATCAAAGCAATGTGCAGGTTGAGCTGCAGTGTTTGTGACAATACTTGTGGGGCTCAAGAGCCAAGGAAAGAGTTACCAAAGCATCACCGAGAGTTTAAACATAGAGATCAGTTGAGGAAGCACTTATTTTATGCACACAAGCTTTCTATGTGCACCTTATGCCTGGAAGGCCGAAAGGTATTTATTTGTGAACAGAAGCTTTATACACGGTCGCAGCTAGACCGACATTTATCTAGAGGAGACTCTGAAGTGGATGGCAGTGAGATAGAAAGGGGAGGTTTCATGGGTCATCCAATTTGTGACTTTTGCAGGAAACGATTTTATGGAGATAGTGAACTTTATGTGCACATGTCAAGAGATCATTATACTTGCGACATATGCCAAAGAAGGCACCCTGAGCACTCTGAGTATTATCAGAATTACAGTGATTTAGAGGCACACTTTAGTCAAGAACACTTCCTATGTGAAAATGATGATTGCATGGCAAAAAAGTTTGTTGTCTTTGCATCTGAAGCAGAGTTGAAGAGGCATAATGCAATTGAGCATGCTGGAAATATGTCCCGGTCTCAACGGAATGCTGCACTGCAAATTCCTGTTAGTTTTCAATATTGGCGTCCAGGGAGTGAGCGTGAGTCTCAACGAGTTGCCAGAGGACGAGGGAGGAACATGAATAGTTCGCTTTCTTCAGCTAACAGCAGTGACATGCTTGACATGGTAGCAAGTTCTTCCACAAGTACTGTATCAACTGATCCTCCCAGGTATCTCACTGCAGTGAGTAGGAGAGCACTTAACTCACCTCTTGAAGAATCTGCCTTTCCTCCCCTTCCCGGGGCATCAGAAACTGATCCTCCCAAGTATCCCACTGCAGTGAGTAGGAGAGCACTTAACTCCCCTCTTGAAGAATCTGCCTTTCCTCCTCTTCCTGTGGCATCAGGAAATGCTTCACATAAATCTATGAACAAAGGAAAGAGATCAGTTAAGTCTATGGCTGCACTTGTACGTGGTCAAAATCTTGGCCCATGCCAGACAAGCAATGCACCTTTGCTTAGTATTGAGGAAGTGCGTGCTGCAAACAAGGAATTAATTGAAAGTATTCAATCAGGTTTGGGAGGCAATGAGCAGAAATTCGTTGCATTTAAAGATGTTTCTTCTCGGTTTCGAAATGGGGATATTGGTGCTCGAAAATATTATTTACATATATCAAAGCTGGGTTTGTCACATATTGTACCTCAGCTTGCAAAGTTATGTCCTGACCAAGACAAGGGAAGAAAACTGCTAGAGGCTCATGAAGCTATGGGAAAACTATCGGAGATGAAATTCTAGTTTGGCTTCTTTAAGCTATTTAAATGATATGCTAATTATGACCAACACAAACTCAAAATCATCCTAGAGTTGATGTGGTCATTTATAAGTGCATATATGTGTGACACAACTACTACAACATTGTAGCTACTCACTTGTGCATTTGATCACATGGTAATAATGGATTTTGAACATATATCTTTGGTAATTGTTACATATATTTAATTTGAGA

Fln Alignment:

sp_v1.1_unigene9316___MEECCAVCAEPLEWLAYGPCGHREVCSTCTSRLRFILNDKNCCICKQECPSVVITKALGDYTNAVRDFSTLPAPANEGKAGNYWLHLDTQAYFDDEQHYKMIKAMCRLSCSVCDNTCGAQEPRKELPKHHREFKHRDQLRKHLFYAHKLSMCTLCLEGRKVFICEQKLYTRSQLDRHLSRGDSEVDGSEIERGGFMGHPICDFCRKRFYGDSELYVHMSRDHYTCDICQRRHPEHSEYYQNYSDLEAHFSQEHFLCENDDCMAKKFVVFASEAELKRHNAIEHAGNMSRSQRNAALQIPVSFQYWRPGSERESQRVARGRGR-XXXXXXXXXXXXXXXXXVAXXXXXXXXXDPPRYLTAVSRRALNSPLEESAFPPLPGASETD---PPKYPTAVSRRALNSPLEESAFPPLPVASGNASHK-SMNKGKRSVKSMAALVRGQ
F6HZD9______________MDDSCAVCAETLEWVSYGPCGHRDVCSTCVARLRFICDDRRCCICKTECNVVFVTKALGDYTRMVNDFSILPTESREGQVGMYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDQM---EEQSNDGSKRRQKFRNIDQLKGHLFHRHKLFMCSLCLEGRKVFICEQKLYNRAQLNQHINTGDSEVDGNEAERGGFMGHPMCDFCRSPFYGDNELYSHMSTEHYTCHICQRQNPGQFEYYKNYDDLEIHFRRDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRR--STEQDQR--RGRGRTFNRDSSADQLSLAIQASLETANANDTYHDPPPSSSSSTQAVSDHYDSDPIIQPFESLAMTDSESSSRYRQALGHNPMNVPLVESFFPPLATAPSSSLPKPKLDSEGLPKNTMAARLRRQ

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
538		66		33	0.997452
549		33	66		0.997452
637			33	66	0.997452
673		66	33		0.997452
692			66	33	0.997452
718		33		66	0.997452
751		75		25	0.996473
777			33	66	0.997452
783	33		66		0.997452
804	16		83		0.994512
920	44		55		1.0
925	22	77			0.999999
930		44		55	1.0
931	44		55		1.0
961		37	62		1.0
992		71		28	1.0
1021		16	83		0.994512
1026	66		33		1.0
1036	33	66			1.0
1060			66	33	1.0
1076	80			20	0.995493
1077	80		20		0.995493
1078	80		20		0.995493
1079	80		20		0.995493
1084	40		60		1.0
1167			20	80	0.995493
1198	25			75	0.996473
1217	66		33		0.997452
1295		20		80	0.995493
1299		80		20	0.995493
1321	80			20	0.995493
1325	25	75			0.996473
1344		75		25	0.996473
1362		25	75		0.996473
1373		33		66	1.0
1374	33			66	1.0
1380		33		66	1.0
1383	33	66			1.0
1442	75		25		0.996473
1506		16		83	0.994512
1544			16	83	0.994512
1597	85	14			0.993533
1598	85		14		0.993533
1601			14	85	0.993533
1605	14	85			0.993533
1608	85			14	0.993533
1611		85	14		0.993533
1613	85			14	0.993533
1615	85			14	0.993533
1618	85	14			0.993533
1619			85	14	0.993533
1964	11			88	0.923564
1965		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain