SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9302

Length: 2581 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9302
CGTCGTGACCTTGGCTGTCACTCATGGTTTGTGAACACTGGCTGCTAAGCACTGTACGATACATACTTCCTTGCATGAAAGAGACTTGCCGGCCCAGATGCCAGGCTACGAGGGTATTTATTTGGCGAAATTCCCTCAAGATTTGCACCCAGTCTCAGATCTCTGTATGACTGCGTGCCATTCAATTGGGGCAGATCACAAAAGGGAACCTGGTGGATGGCTTAACACTCTGTAACGTTAACAGTCAACCAGGGCCCTTCTGGCTGCTCATTTATCTTTAGTTGAATGATAATCTCAATCTCTCCATTCTCTAAATCTTTTTATCCCTATTTTGGTTGAGAAGATCCACACAGCGAGTTAGTGCATAGCTACAACTCTACATACGGTTCTGTTGGTTGAGTTTTACCAATGACATAGATACCACGGGAAATGCTCTGATCTCGCATTTTCAATAAGAGCCCTTATCCACAGCTAGTTGTTGCTCTTGAATTCTGGACTGCCCTCCTGAATGCCAAAAATCACATCTCCTGCATGCATAATTCAACCCCAAATGACTTTCTCCTCTCGTGATGGGTAACAAGCTGTCAAGGAGGCGTTCTCAGCAACGTGCACCCTCATATCGATCTAACAGGCATCTGGGTCCTGAAAGGTTACGCCAGCCTCAACAACAGATGGCACCCACGCAACCTTGGCTGTCACTCAAAGAGAAATATGCGTTCATCCCAGATCAGTATGAAACCGTTGATCAGGTAACTGCTGCATTGCGAGAGTCTGGACTCGAGTCTTCTAACTTGATTCTTGGTATTGACTTCACCAAGAGCAATGAATGGACAGGTAGACATTCTTTTAATGGGCGAAGTCTACATGAGATTGGGAGTGTTATGAATCCATATGAACAAGCTATTTCAATCATTGGACGTACTTTGTCTCCTTTTGATGAGGACAATCTAATCCCATGTTATGGCTTTGGTGATGCTACTACACACGATGTTAATGTCTTCAGCTTCTATGAAAACAATCGACCCTGCCATGGGTTTGAACAAGTGCTTGAGCGCTATAAGGAGATTGTTCCGCATCTAATATTAGCTGGTCCAACGTCTTTTGCTCCAGTTGTTGAGGCGTCAATGGGCATTGTGGAAGCAAGTGGCGGTCAGTATCATGTTCTTGTTATTATTGCGGATGGACAGGTAACCAGGAGTAGTGAGACAAGGTCTGACGAGTTAAGCCCACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCGTTATCCACTATCAATAGTACTGGTTGGGGTTGGTGATGGACCTTGGGATATGATGCGTCAATTTGATGATAAACTGCCCCGCCGTGAATTTGACAATTTTCAGTTTGTGAATTTTACGGACATTATGTCAAAGAATCTTCCTCAATCTGCGAAGGAAGCAGCATTTGCTCTTGCTGCACTTATGGAGATCCCAACTCAGTATAAAGCAACGATCGAACTCAAAATTTTGGGTCATCAGGTCGGAAGGGCTCCAAATATAGTGCCACGTAATCCTCCTTTGCCAACTATTCAGCGTGATGTTGCCCCGTCAAGTCTTCCAGACTCCACAAATGTCCAATTGTCAACTATTCAGCATGACGCTGCCCGGTCAAGTCTTCCAGACTCCACAAACTTGCAATCTACGGCTTCACATGACATCAGTTCTACAGAGAATTCCTCAGCAGGATTGAGTTCGGAAAGAGAGCCACAGGCTTGCCCTGTTTGTTTGACCAATTCTAAAGAGATGGCATTTGGTTGTGGACATATGACCTGTAGAAATTGTAGCCAAAATTTGTCGAACTGTCCCTTATGTCGGACACACATCTCGACACGTTTGCGAGTGTATCCTTCTTGAAGAGTCGTTCATATTGCTGATGACGTGTTCACTCTTGATGAATGATCTTGGCAAATCGGTGCGTTCAGAGCCTCTGCTATGAAAAATCTATATTGGAATTTATTTTTTGATTTTCAGCTGGTATTGTAAGTGCAAATGTTTTTCATGTTGAGTGGATGGAATTGGCAGAAACCTATCACACAGTCAGGGTTAGGACAACGTGGCATATTCAGGCAATACTTGTAATAAATTCCTGTACATAAGGAAAGATGGTGAACAAACAGCACGTCGCTTTTGGCCTTGGTGCAGGTGTGAGCTTACAACAGATGTACAAATTTGTTATTGTGGTGATTGTACTGCTTTGTCATGATAGACACTTGTTGTATATGCGAAGAAGATTGATGAGTCAAAATCACTCCTATCTCATATGATTATTTTGCCTCGTGTACATCCAACGATTTATTTGTTTCGAAGTGGTAAGAATATATAGCAGAAAACCTTCGGCTCCCCCGCCATTTCTTATCAAGCAATGGGTGATTATTCTATGATATCATCTCGAGAATTACTGAGTATTTCTGCATCCAAAGCTAGGATGGAATACACTTTCAAATCAAAAGATTGATAGTTCTTTATAGTATGACAATCAAGTGGAAATACTTTTGTTTTCGAACTTTGTTTCACAAGGAATTTCAAATTTGATTTTCCGATTTTCGTTTCGG

Ace file of the UniGene sp_v1.1_unigene9302

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copine I-like protein n=2 Tax=Oryza sativa RepID=Q6YYC5_ORYSJ	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	copine iii-like	-	-	72%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	72%
Blast2go	von Willebrand factor, type A	IPR002035	-	72%
Blast2go	Copine	IPR010734	-	72%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV17

Fln msg:

Fln protein: MGNKLSRRRSQQRAPSYRSNRHLGPERLRQPQQQMAPTQPWLSLKEKYAFIPDQYETVDQVTAALRESGLESSNLILGIDFTKSNEWTGRHSFNGRSLHEIGSVMNPYEQAISIIGRTLSPFDEDNLIPCYGFGDATTHDVNVFSFYENNRPCHGFEQVLERYKEIVPHLILAGPTSFAPVVEASMGIVEASGGQYHVLVIIADGQVTRSSETRSDELSPQEQKTIDAIATASRYPLSIVLVGVGDGPWDMMRQFDDKLPRREFDNFQFVNFTDIMSKNLPQSAKEAAFALAALMEIPTQYKATIELKILGHQVGRAPNIVPRNPPLPTIQRDVAPSSLPDSTNVQLSTIQHDAARSSLPDSTNLQSTASHDISSTENSSAGLSSEREPQACPVCLTNSKEMAFGCGHMTCRNCSQNLSNCPLCRTHISTRLRVYPS*

Protein Length: 439

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTTGTGAACACTGGCTGCTAAGCACTGTACGATACATACTTCCTTGCATGAAAGAGACTTGCCGGCCCAGATGCCAGGCTACGAGGGTATTTATTTGGCGAAATTCCCTCAAGATTTGCACCCAGTCTCAGATCTCTGTATGACTGCGTGCCATTCAATTGGGGCAGATCACAAAAGGGAACCTGGTGGATGGCTTAACACTCTGTAACGTTAACAGTCAACCAGGGCCCTTCTGGCTGCTCATTTATCTTTAGTTGAATGATAATCTCAATCTCTCCATTCTCTAAATCTTTTTATCCCTATTTTGGTTGAGAAGATCCACACAGCGAGTTAGTGCATAGCTACAACTCTACATACGGTTCTGTTGGTTGAGTTTTACCAATGACATAGATACCACGGGAAATGCTCTGATCTCGCATTTTCAATAAGAGCCCTTATCCACAGCTAGTTGTTGCTCTTGAATTCTGGACTGCCCTCCTGAATGCCAAAAATCACATCTCCTGCATGCATAATTCAACCCCAAATGACTTTCTCCTCTCGTG_-_ATGGGTAACAAGCTGTCAAGGAGGCGTTCTCAGCAACGTGCACCCTCATATCGATCTAACAGGCATCTGGGTCCTGAAAGGTTACGCCAGCCTCAACAACAGATGGCACCCACGCAACCTTGGCTGTCACTCAAAGAGAAATATGCGTTCATCCCAGATCAGTATGAAACCGTTGATCAGGTAACTGCTGCATTGCGAGAGTCTGGACTCGAGTCTTCTAACTTGATTCTTGGTATTGACTTCACCAAGAGCAATGAATGGACAGGTAGACATTCTTTTAATGGGCGAAGTCTACATGAGATTGGGAGTGTTATGAATCCATATGAACAAGCTATTTCAATCATTGGACGTACTTTGTCTCCTTTTGATGAGGACAATCTAATCCCATGTTATGGCTTTGGTGATGCTACTACACACGATGTTAATGTCTTCAGCTTCTATGAAAACAATCGACCCTGCCATGGGTTTGAACAAGTGCTTGAGCGCTATAAGGAGATTGTTCCGCATCTAATATTAGCTGGTCCAACGTCTTTTGCTCCAGTTGTTGAGGCGTCAATGGGCATTGTGGAAGCAAGTGGCGGTCAGTATCATGTTCTTGTTATTATTGCGGATGGACAGGTAACCAGGAGTAGTGAGACAAGGTCTGACGAGTTAAGCCCACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCGTTATCCACTATCAATAGTACTGGTTGGGGTTGGTGATGGACCTTGGGATATGATGCGTCAATTTGATGATAAACTGCCCCGCCGTGAATTTGACAATTTTCAGTTTGTGAATTTTACGGACATTATGTCAAAGAATCTTCCTCAATCTGCGAAGGAAGCAGCATTTGCTCTTGCTGCACTTATGGAGATCCCAACTCAGTATAAAGCAACGATCGAACTCAAAATTTTGGGTCATCAGGTCGGAAGGGCTCCAAATATAGTGCCACGTAATCCTCCTTTGCCAACTATTCAGCGTGATGTTGCCCCGTCAAGTCTTCCAGACTCCACAAATGTCCAATTGTCAACTATTCAGCATGACGCTGCCCGGTCAAGTCTTCCAGACTCCACAAACTTGCAATCTACGGCTTCACATGACATCAGTTCTACAGAGAATTCCTCAGCAGGATTGAGTTCGGAAAGAGAGCCACAGGCTTGCCCTGTTTGTTTGACCAATTCTAAAGAGATGGCATTTGGTTGTGGACATATGACCTGTAGAAATTGTAGCCAAAATTTGTCGAACTGTCCCTTATGTCGGACACACATCTCGACACGTTTGCGAGTGTATCCTTCTTGA___AGAGTCGTTCATATTGCTGATGACGTGTTCACTCTTGATGAATGATCTTGGCAAATCGGTGCGTTCAGAGCCTCTGCTATGAAAAATCTATATTGGAATTTATTTTTTGATTTTCAGCTGGTATTGTAAGTGCAAATGTTTTTCATGTTGAGTGGATGGAATTGGCAGAAACCTATCACACAGTCAGGGTTAGGACAACGTGGCATATTCAGGCAATACTTGTAATAAATTCCTGTACATAAGGAAAGATGGTGAACAAACAGCACGTCGCTTTTGGCCTTGGTGCAGGTGTGAGCTTACAACAGATGTACAAATTTGTTATTGTGGTGATTGTACTGCTTTGTCATGATAGACACTTGTTGTATATGCGAAGAAGATTGATGAGTCAAAATCACTCCTATCTCATATGATTATTTTGCCTCGTGTACATCCAACGATTTATTTGTTTCGAAGTGGTAAGAATATATAGCAGAAAACCTTCGGCTCCCCCGCCATTTCTTATCAAGCAATGGGTGATTATTCTATGATATCATCTCGAGAATTACTGAGTATTTCTGCATCCAAAGCTAGGATGGAATACACTTTCAAATCAAAAGATTGATAGTTCTTTATAGTATGACAATCAAGTGGAAATACTTTTGTTTTCGAACTTTGTTTCACAAGGAATTTCAAATTTGATTTTCCGATTTTCGTTTCGG

Fln Alignment:

sp_v1.1_unigene9302___MGNKLSRRRSQQRAPSYRSN---RHLGPERL----RQPQQQMAPTQ--PWLSLKEKYAFIPDQYETVDQVTAALRESGLESSNLILGIDFTKSNEWTGRHSFNGRSLHEIGSVMNPYEQAISIIGRTLSPFDEDNLIPCYGFGDATTHDVNVFSFYENNRPCHGFEQVLERYKEIVPHLILAGPTSFAPVVEASMGIVEASGGQYHVLVIIADGQVTRSSETRSDELSPQEQKTIDAIATASRYPLSIVLVGVGDGPWDMMRQFDDKLPRREFDNFQFVNFTDIMSKNLPQSXXXXXXXXXXLMEIPTQYKATIELKILGHQVGRAPNIVPRNPPLPTIQRDVAPSSLPDSTNVQLSTIQHDAARSSLPDSTNLQSTASHDISSTENSSAGLSSEREPQACPVCLTNSKEMAFGCGHMTCRNCSQNLSNCPLCRTHISTRLRVYPS
A9NV17______________MGNKLSRRRSQQQPSSSQSQTTYRQLVPERLNTRRRQSQQQLAHTQQVPEVSLKEKYAFIPDQYETIDQVTAALRDSGLESSNLILGIDFTKSNEWTGRHSFNGRSLHEIGSIMNSYEQAISIIGRTMSPFDEDNLIPCYGFGDATTHDVNVFSFYENNRPCHGFEQVLERYKEIVPHLILAGPTSFAPVVEASMDIVEASGGQYHVLVIIADGQVTRSSDTRPEQLSPQEQKTIEAIANASRYPLSIILVGVGDGPWDMMRQFDDKLPRREFDNFQFVNFTSIMSKNLPQSAKEAAFALAALMEIPTQYKATIELKILGHQIGRVPNIVPRNPPLPTIQHDAAPSSLP--------------------DSTNFQSTASHNISSTENSPAGLSSESQSQACPVCLTNSREMAFGCGHMTCRNCSQNLSNCPLCRMPISTRLRVYSS

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
565	14			85	0.993533
566		85	14		0.993533
583		14		85	0.993533
617	62		37		1.0
618		12		87	0.992554
619	87		12		0.992554
620	12			87	0.992554
624			12	87	0.992554
625		87	12		0.992554
626	12			87	0.992554
627	87		12		0.992554
629	12	87			0.992554
632			87	12	0.992554
636		87		12	0.992554
680		87	12		0.992554
681	87			12	0.992554
684		87		12	0.992554
685	87		12		0.992554
740		75		25	1.0
1141		90		10	0.90298
1142	90		10		0.90298
1147	10		90		0.90298
1151		10		90	0.90298
1154		10	90		0.90298
1157			10	90	0.90298
1158		90		10	0.90298
1160		10		90	0.90298
1339	88		11		0.923564
1347		90		10	0.90298
1349		90	10		0.90298
1350		90		10	0.90298
1354			90	10	0.90298
1357	90		10		0.90298
1358	90	10			0.90298
1360			10	90	0.90298
1362		10	90		0.90298
1392	90			10	0.90298
1874	11			88	0.923564
1948	80			20	0.995493
2173		9		90	1.0
2176		9	90		1.0
2181			9	90	1.0
2184	90	9			1.0
2185	90			9	1.0
2186		90		9	1.0
2187	90		9		1.0
2189	90	9			1.0
2195	90			9	1.0
2196	90	9			1.0
2200		3		90	0.996531
2380		6		93	0.999453
2396			70	29	1.0
2524	16			16	0.988813

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain