SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9301

Length: 1579 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9301

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ER lumen protein retaining receptor, putative	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	er lumen protein retaining receptor family protein	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ER lumen protein retaining receptor	IPR000133	-	0.0	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABR9

Fln msg:

Fln protein: MATMRKSRRNPVHVVSSWVARQPPKVKAFLAVVSGITALVALRFVVHNHDNLFVAAEATHAVGISVLIYKLFKERNCAGLSLKSQELTAIFLAVRVYCSFVMEYDIHTVLDCATLVTTLWVIYMIRFKLKATHDEDLDNFPIYYVVIPCAVLALFIHPSTSHNIVNRILWAFCVYLEAVAVLPQLRVMQNTKIVEPFTAHYVFALGIARFFSCAHWVLQVLDSRGYLLIALGHGLWPSMVLLSEIVQTFILADFCYYYVQSVVGGQLVLRLPSGVV*

Protein Length: 278

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTGTATTGAGGACGTTGCGCTGGTCTGGTCCGAGTTGCTTGGTGGAGACTTTTATCAAAACAATCCTGTGTGTTACATTGGACTGAAATTCTGAAGTGGGCACTGTCCTTCCGTTCGCCTGTAATCAGAAACA_-_ATGGCGACAATGAGGAAATCCAGGAGGAATCCAGTGCATGTGGTATCATCCTGGGTAGCAAGGCAACCCCCAAAGGTGAAGGCGTTTCTAGCGGTAGTAAGTGGCATCACAGCTCTTGTCGCTCTCAGATTCGTGGTTCACAACCATGATAATCTCTTCGTTGCTGCCGAAGCAACACATGCTGTGGGCATCTCTGTCTTGATCTACAAGCTCTTCAAGGAACGGAACTGTGCAGGCTTATCACTTAAATCTCAGGAGCTTACTGCTATATTCTTAGCAGTGAGGGTGTACTGCAGTTTTGTTATGGAATATGATATACACACAGTGCTTGATTGTGCAACATTAGTCACCACTTTGTGGGTGATTTACATGATACGTTTCAAGTTGAAGGCAACACATGATGAAGATTTGGATAATTTTCCGATATATTATGTGGTGATTCCATGTGCAGTACTTGCCCTTTTTATCCATCCATCAACATCCCATAATATTGTAAACAGGATACTTTGGGCCTTTTGTGTTTACCTTGAAGCTGTTGCAGTTTTACCCCAGCTTCGCGTGATGCAAAATACAAAGATAGTTGAACCATTCACAGCCCATTATGTGTTTGCATTGGGTATTGCAAGGTTTTTCAGCTGTGCACATTGGGTACTCCAGGTTTTGGATAGCCGTGGCTACTTGTTGATTGCATTGGGCCATGGCTTGTGGCCGTCCATGGTACTTTTGTCAGAGATTGTTCAGACTTTTATTTTGGCAGATTTTTGCTACTACTATGTTCAAAGTGTTGTAGGAGGGCAACTGGTGCTGCGGCTTCCTTCAGGAGTGGTGTGA___TTTCAATCTAATGGCTCCGCTGAAGTTTCTATGGAACTGGTGTATGCTTTGGATCTGGTGCCAAGATCTTTCATGTTTAATTCTTAATTCTCTACAATTAATTCTAGGTAGATTTATAGGATGCAAAACAGACGGCTGTAAGAGTTTTACCTCCATATGGATGGATGAGGGAACTGGAGGTGGAATTCACTTCTGCAAAGTTTTGCTTCAAGTCTAGTTGTTCCAGTTTGTTCATATGGATTTTTTACTTGTGCATCCTCGCGTGGGTTCTCTACAATGCTGAATCCAATTTTAAGGCTTTGATTTTATAAAACGCTTGCCAGTGTTGTGTATATTTACTGTCCCGATGAATAACTTGCAGTCTAGGCTTTTACTGTGGACTTTAAAACCATCATCTTGACCATCTGTACAGTGTATATACGCACAACTCTATCAGATGGCTTTTTGTAAAGGAGAATTCGTGCAATAAACAGTCCATTGGTTTCAAGATTAGCTCGTTTATGAACTTTATTAGCTCATGCTATTGGAAACAAGGCAAATTTGCATCAATGGATACTATTTTTAAAATGCATATTATAATAACACTTT

Fln Alignment:

sp_v1.1_unigene9301___MATMRKSRRNPVHVVSSWVARQPPKVKAFLAVVSGITALVALRFVVHNHDNLFVAAEATHAVGISVLIYKLFKERNCAGLSLKSQELTAIFLAVRVYCSFVMEYDIHTVLDCATLVTTLWVIYMIRFKLKATHDEDLDNFPIYYVVIPCAVLALFIHPSTSHNIVNRILWAFCVYLEAVAVLPQLRVMQNTKIVEPFTAHYVFALGIARFFSCAHWVLQVLDSRGYLLIALGHGLWPSMVLLSEIVQTFILADFCYYYVQSVVGGQLVLRLPSGVV
D5ABR9______________MAIVRKSRRNPVHVVSSWVARQPPKVKAFLAVVSGITALIVLRFVVHNHDNLFVAAEATHAVGISVLIYKLFKERNCAGLSLKSQELTAIFLAVRVYCSFVMEYDIHTVLDSATLATTLWVIYMIRFKLNATHDEDLDNFPIYYVVIPCAALALFVHPTTSHNIVNRILWAFCVYLEAVAVLPQLRVMQNTKIVEPFTAHYVFALGIARFFSCAHWVLQVLDSRGYLLTALGHGLWPSMVLLSEIVQTFILADFCYYYVQSVVGGQLVLRLPSGVV

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
96	28			71	1.0
97		42	57		1.0
117	88	11			0.923564
118			11	88	0.923564
124	88	11			0.923564
125		11	55	33	1.0
127			88	11	0.923564
131	88			11	0.923564
133	11			88	0.923564
134		11	88		0.923564
137	11	88			0.923564
151		22		77	0.999999
165	44		55		1.0
181		12		87	0.992554
815	25	75			0.996473
817		75	25		0.996473
818		75	25		0.996473
819	75		25		0.996473
928		10	90		0.90298
929	10	90			0.90298
1026	88	11			0.999952
1027			11	88	0.999952
1028			88	11	0.999952
1031	88	11			0.999952
1126		10	89		0.999919
1127	89			10	0.999919
1128		89		10	0.999919
1136	88	11			0.999952
1186			25	75	1.0
1192	72			27	1.0
1193	72			27	1.0
1194	68	5	26		1.0
1196		26		73	1.0
1198			31	68	1.0
1200		26	73		1.0
1201	26	68			1.0
1202	5	26		68	1.0
1483	12		87		0.992554
1485	12			87	0.992554
1486	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain