SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9298

Length: 516 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene9298
CGTCGTGACCTTGGCTGTCACTCAGCGGGGTAAAATTCTGATGGTACCAGGACATCAGGCTAAGAGTTTGGACGGAAGTTTAGGCAGAAGTAATGTCCCAGAAAGAGACGGTATTTTTCCGAGAGATTTATCGGAACAATGGAGGGAGGTCAGGTCCTCTCCCACACAAAGTGTGGGTTCTCGTGAGACAAGATCTGAGCAGCGCAACCAAATTGACAAGGACAGGAGTAAGTCAGAGAGAGAGAGAGCTGTTTTGTCTCAAAGAGGTCTTCATGGAATGAGTGCAGAGAAAGTTGTCTCAGGAGCTCCGATAAGTCCAGAGAGGGTTCTCCTAGAGATTGTTTCTGAACCTATTCCAATTATGTCTCAAAAACTTCAAGAGATGCCAGACAACTCACTGGAACATTTGCGGGAGTGTCTGCGGGAGCTGATAGGAAACAACAAAAAGAGCAAAGAACTCTCGACTTTTCAGGCGATACTACAGAGGAGAAGTGATCTGACATCAGAGGCATTATT

Ace file of the UniGene sp_v1.1_unigene9298 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RVN5_RICCO	-	-	1.0e-11	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	28%
Blast2go	protein binding	-	-	2.27056e-11	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF1423, plant	IPR004082	-	2.27056e-11	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV71

Fln msg: Distance to subject end: 412 aas, your sequence is shorter than subject: 171 - 623

Fln protein: VVTLAVTQRGKILMVPGHQAKSLDGSLGRSNVPERDGIFPRDLSEQWREVRSSPTQSVGSRETRSEQRNQIDKDRSKSERERAVLSQRGLHGMSAEKVVSGAPISPERVLLEIVSEPIPIMSQKLQEMPDNSLEHLRECLRELIGNNKKSKELSTFQAILQRRSDLTSEAL

Protein Length: 172

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCGGGGTAAAATTCTGATGGTACCAGGACATCAGGCTAAGAGTTTGGACGGAAGTTTAGGCAGAAGTAATGTCCCAGAAAGAGACGGTATTTTTCCGAGAGATTTATCGGAACAATGGAGGGAGGTCAGGTCCTCTCCCACACAAAGTGTGGGTTCTCGTGAGACAAGATCTGAGCAGCGCAACCAAATTGACAAGGACAGGAGTAAGTCAGAGAGAGAGAGAGCTGTTTTGTCTCAAAGAGGTCTTCATGGAATGAGTGCAGAGAAAGTTGTCTCAGGAGCTCCGATAAGTCCAGAGAGGGTTCTCCTAGAGATTGTTTCTGAACCTATTCCAATTATGTCTCAAAAACTTCAAGAGATGCCAGACAACTCACTGGAACATTTGCGGGAGTGTCTGCGGGAGCTGATAGGAAACAACAAAAAGAGCAAAGAACTCTCGACTTTTCAGGCGATACTACAGAGGAGAAGTGATCTGACATCAGAGGCATTATT

Fln Alignment:

sp_v1.1_unigene9298___VRSSPTQSVGSRETRSEQRNQI----DKDRSKSERERAVLSQRGLHGMSAEKVVSGAPISPERVLL-EIVSEPIPIMSQKLQEMPDNSLEHLRECLRELI---GNNKKSKELSTFQAILQRRSDLTSEAL
A9NV71______________VRESPSESASSRETWPTEQTRVEVVAEHSRHKKEMEREKETEE--ESERPEQTVVHRVANSDRILLRDIAGGGLDVIAERMREQPEEFLEDLKTELRVILEGTGGLQHREEFALLQKLVQGRSDLTPESM

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
309		16	83		0.994512
310		16		83	0.994512
311		16		83	0.994512
312	16		83		0.994512
313	16	83			0.994512
314			83	16	0.994512
376		33		66	0.997452
378	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
269	282	CT CT CT CT CT CT CT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain