SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9284

Length: 982 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9284

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Commd3, MGC72959; COMM domain containing 3	-	-	7.0e-14	30%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	38%
Blast2go	comm domain containing 3	-	-	6.96926e-30	48%

Source	InterPros	Term	Type	e value	Identity
Blast2go	HCaRG	IPR009886	-	6.96926e-30	48%
Blast2go	COMM domain	IPR017920	-	6.96926e-30	48%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A9SN03

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 598 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 204 - 916

Fln protein: MEIRGDVPNALKPFSCNGDDNSSATPENLRAMARAALSVVLQHQTEESAFSAPPFHEIPVDLIKQTYSALVCIYLEAARRDLSSHQFLLYLTQRCALSDPASKPLGDLFMENKQELRKLLCRSAHHSSLARLTGVDWRLDYCVSASEHKACKELLYFLGLKILDSTTLSEDNLEFVCTVEQLQDLVGQLKDACKSVERGLGQS*

Protein Length: 205

Fln nts: GGGATGCGGAAATGGGCATGGGGACAACCACATTGAGAAATGGCGTGATAACGAATGGTGGAGAGCC_-_ATGGAGATCAGAGGAGATGTCCCAAACGCTCTCAAACCATTCTCTTGCAATGGCGATGATAATTCGAGTGCAACTCCAGAGAATTTGAGAGCTATGGCCAGAGCCGCCCTTTCCGTCGTACTCCAACACCAGACAGAAGAATCCGCTTTTTCTGCCCCCCCATTCCATGAAATCCCGGTTGACCTCATTAAACAAACCTATTCAGCGCTCGTCTGTATATATTTGGAGGCCGCTCGCAGAGACCTCTCTTCCCACCAATTCCTCTTATATCTCACACAACGCTGCGCCTTATCGGACCCCGCATCGAAGCCTCTGGGCGACTTGTTCATGGAAAATAAGCAGGAACTACGAAAACTTTTGTGTCGGAGTGCTCACCATTCTTCCCTAGCGCGGCTTACAGGGGTCGACTGGAGACTCGACTACTGCGTATCTGCGTCGGAACACAAGGCTTGCAAAGAGCTTCTCTATTTTCTGGGGCTTAAAATTCTGGATTCCACCACGCTGTCTGAGGATAATCTTGAATTTGTCTGCACGGTTGAACAGCTACAGGATCTGGTCGGGCAGTTGAAGGACGCGTGTAAATCAGTTGAAAGGGGTCTGGGTCAGAGTTGATGGTCTTCGATCGTCGCGGACGGTTCGAGTCTCCTCAGGTGAACTGTGTGCGCATCCTAACTTTAGGCGGCCCCATGGTTTGGGTTCGTTTAGTTGTGTATGAGATCCTCGTCTGCAAGGCAGATGCTGTGCCATTGAAGAGCACCAGATTGATTCTTATTTCTTGAATTTCTTTTTCTGGATTATATTAATGATCTTGGTATCCAAAGATGAATGCAAAATTTTTGCACAACATCTGAACTAGGGTTGAAATCATAGAACCAATGTCCATCAGAATGCTTTCTATTGGTATTTGGCCTGCCG

Fln Alignment:

sp_v1.1_unigene9284___MEIRGDVPNALKPFSCNGDDNSSATPENLRAMARAALSVVLQHQTEESAFSAPPFHEIPVDLIKQTYSALVCIYLEAARRDLSSHQFLLYLTQRCALSDPASKPLGDLFMENKQELRKLLCRSAHHSSLARLTGVDWRLDYCVSASE---------HKA--CKELLYFLGLKILDSTTLSEDN--LEFVCTVEQLQDLVGQLKDACKSVER
A9SN03______________IDIEGDVVESLRSIA-------NCSDAEIEAFAGAAQSVLLSLQREDAALDGPIFEQIEVDLIKKLYSALACLFVEAAKSNASEGSLVKFLSGRSGVSESQAEIVARIFVDGKERLRKDLSRTGDFSSISRLKGVDWRLEYRVASGDEGEEQGTGPHRAPPRRDLLYHVVLKTGEKVEGGEANGQAAFACSVEQLQDMVSTLKDACKAVER

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
27	80			20	0.995493
28		60	20	20	0.99255
29		60	40		1.0
30	60		40		1.0
31		60	40		1.0
229	83	16			0.994512
232		83	16		0.994512
233		83	16		0.994512
234	83	16			0.994512
237	83			16	0.994512
238	83	16			0.994512
240		16		83	0.994512
241		83		16	0.994512
243	16	83			0.994512
289		28		71	1.0
290			28	71	1.0
292		28	71		1.0
294	71			28	1.0
296	28		71		1.0
300		57		42	1.0
302		71	28		1.0
305	71			28	1.0
307	71			28	1.0
308		28	71		1.0
472		22		77	0.999999
511	30		69		1.0
561		9		90	0.999872
577		10	90		0.999898
749		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain