SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9271

Length: 1977 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9271
CGTCGTGACCTTGGCTGTCACTCAGGTTCTTGTTCTGGTGGCTTTTGGTTCTGGTGGCTTCCCTTCAAACCCCATAAAACTGATAAACATACATTCGTCCGCATACCATACGATCTACTCCCAATATGCAAAAGAGATTGAAGCCACGTCGTCTGTCTATGTCGGAAGCTTTGGTGTGTCAAGGCCTTTTATTCTCCAGGTTTTTATGTACTCTCAGACATGAATGCTTGATATATTAAATCCTACATAAAATCTCTGAACAGTCCCATAAATACTGTATGCGGCAATTTTACAAAGTCGCGATTCTAACGTATTGTGGACAATAAAGAGGGGTGGAACCCTTTCTTGGGGCGGTTTTCTGAAGTGTCGCTCGATTTCTTCAAATTTAGCGGCAGTTTCTTGATGTGGGATCTTGATTTTGCAGCAGGCTATTCACAGTCGGTATTTCAATTTTTTTCCAATTCATGTGGCGTTTTGGGAATTAGATACCGTCCGCATGAAAGGGATGAGGAAAACGACGATATTTGCTATGGTTCTATGAACCGAGACTCTCTGTTATTTGTACGCAATCAGGACTGCACAAATTTGGGGGGTTTCAGCTCTTGGGCATAGTTCTCAGTCATGAGTTCTATCAGGTTTTTCGTGAATAAACATAGGAGAAAAGTTCTTTTCACATTAGGGATTGTAGGAGGTAGCTATGCTCTCTATCGGTTCTACTGTGCTCAGAAGGAGCGGATGTTGGTTCTGGAACAAGAAGAGGAAGCTCAACGCCAAGCAGATGAACTTGTAGAAATCCGGTTGCGAGAACATTTTGAGAGCCTTCAGAGAATGTCAGATTCGTCTTCGCTAGCAGCTGCTTTGGATACTCTCAAAGATCATCTTTTAGAGGCTTTGGATTATACTGAATTGACGGAAAGATTGAATAAAGGAAAAGGGCAGCTCAATCCGCATGAGAAATTGCAGTTGTGGGAAAGACTTAAAATTCTAAGTTTCACAAGGACTGTGTGTGCGTTGTGGGCTATGACGGTGCTTAATTTATACACAAGAACTCAGCTCAACATTTTAGGGAGACATTTCTTCATCAATCAAGCGCGCGGGTTTGAAAATCTAGAACCAGTGGATCAGTCCATTGCACTTTGTCAGCAGAAATTTCTTGGTTCTGCTGATTTCCTGCCTCAGTATGGTGTCACTGGTTTGATTGTACGAATGGAAAAAATAGTTGAAAATGTTCTGGAAAGCAAGCATTTAAGGGAGCCTTTAACTGTTGGTGAATTATATGATATTTTTAGAAGAATACTGAACAATTTTCCAAGCAGTTCATTGCACTGGATAAATTATGTAATTCCAGAGAACGGATTGTTGTATCAAGAGCTTTCAACTGGTACCTCAACCTTTGGTGTTTCTCAATTGCCACGTGCGGTTCTTAGTCCCTTTGAAACTGAGAGGGCAAAGCTAGAGCAGTTGATGGCAGAGACTCGTGATGTTTTGTTAAGCAATGACTTTGTTCTCATACTAGAACAATCACTGAAGACTGTTTTGGACAGCATGATGGATGAGTTTAATACAATGTTTGAGGGAAGCGCTTCCAGCAGCATTCCTCTAGCTAAGCTTTTACCTCCAGTTGCCCATGCGAGCACTGTACTTCTTGAGCATCCTACCAAGAACAGGTTCATCAACATAATTGGGAAACTTCCACAAGTGCAATCATTTTTTGCTCTAGTTTATGCAAATGCTGGAGGGATATCATGATAGTCAATTTGTTTAGTTGCCCTTTGTATTTTAGTCATTTTTTCACATTTGCAGTGTAATTCTTCATGCTCTCATAAGTGGCAACAATATAGCATGGGGAGTTTCTGCTAATTATTTTCCACAATTGGAATAATGTTAACTTGTTATGGGGTATGCGTGCAAGGCATGTAGAGCAATTTTGTATATTTTTAAATGTTTAATATCATATTTTAGGTCTTAAGAATAGTT

Ace file of the UniGene sp_v1.1_unigene9271

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	amino acid transporter, putative; K13336 peroxin-3	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome organization	GO:0007031	Biological Process	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peroxin-3	IPR006966	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPM6

Fln msg:

Fln protein: MSSIRFFVNKHRRKVLFTLGIVGGSYALYRFYCAQKERMLVLEQEEEAQRQADELVEIRLREHFESLQRMSDSSSLAAALDTLKDHLLEALDYTELTERLNKGKGQLNPHEKLQLWERLKILSFTRTVCALWAMTVLNLYTRTQLNILGRHFFINQARGFENLEPVDQSIALCQQKFLGSADFLPQYGVTGLIVRMEKIVENVLESKHLREPLTVGELYDIFRRILNNFPSSSLHWINYVIPENGLLYQELSTGTSTFGVSQLPRAVLSPFETERAKLEQLMAETRDVLLSNDFVLILEQSLKTVLDSMMDEFNTMFEGSASSSIPLAKLLPPVAHASTVLLEHPTKNRFINIIGKLPQVQSFFALVYANAGGIS*

Protein Length: 377

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTCTTGTTCTGGTGGCTTTTGGTTCTGGTGGCTTCCCTTCAAACCCCATAAAACTGATAAACATACATTCGTCCGCATACCATACGATCTACTCCCAATATGCAAAAGAGATTGAAGCCACGTCGTCTGTCTATGTCGGAAGCTTTGGTGTGTCAAGGCCTTTTATTCTCCAGGTTTTTATGTACTCTCAGACATGAATGCTTGATATATTAAATCCTACATAAAATCTCTGAACAGTCCCATAAATACTGTATGCGGCAATTTTACAAAGTCGCGATTCTAACGTATTGTGGACAATAAAGAGGGGTGGAACCCTTTCTTGGGGCGGTTTTCTGAAGTGTCGCTCGATTTCTTCAAATTTAGCGGCAGTTTCTTGATGTGGGATCTTGATTTTGCAGCAGGCTATTCACAGTCGGTATTTCAATTTTTTTCCAATTCATGTGGCGTTTTGGGAATTAGATACCGTCCGCATGAAAGGGATGAGGAAAACGACGATATTTGCTATGGTTCTATGAACCGAGACTCTCTGTTATTTGTACGCAATCAGGACTGCACAAATTTGGGGGGTTTCAGCTCTTGGGCATAGTTCTCAGTC_-_ATGAGTTCTATCAGGTTTTTCGTGAATAAACATAGGAGAAAAGTTCTTTTCACATTAGGGATTGTAGGAGGTAGCTATGCTCTCTATCGGTTCTACTGTGCTCAGAAGGAGCGGATGTTGGTTCTGGAACAAGAAGAGGAAGCTCAACGCCAAGCAGATGAACTTGTAGAAATCCGGTTGCGAGAACATTTTGAGAGCCTTCAGAGAATGTCAGATTCGTCTTCGCTAGCAGCTGCTTTGGATACTCTCAAAGATCATCTTTTAGAGGCTTTGGATTATACTGAATTGACGGAAAGATTGAATAAAGGAAAAGGGCAGCTCAATCCGCATGAGAAATTGCAGTTGTGGGAAAGACTTAAAATTCTAAGTTTCACAAGGACTGTGTGTGCGTTGTGGGCTATGACGGTGCTTAATTTATACACAAGAACTCAGCTCAACATTTTAGGGAGACATTTCTTCATCAATCAAGCGCGCGGGTTTGAAAATCTAGAACCAGTGGATCAGTCCATTGCACTTTGTCAGCAGAAATTTCTTGGTTCTGCTGATTTCCTGCCTCAGTATGGTGTCACTGGTTTGATTGTACGAATGGAAAAAATAGTTGAAAATGTTCTGGAAAGCAAGCATTTAAGGGAGCCTTTAACTGTTGGTGAATTATATGATATTTTTAGAAGAATACTGAACAATTTTCCAAGCAGTTCATTGCACTGGATAAATTATGTAATTCCAGAGAACGGATTGTTGTATCAAGAGCTTTCAACTGGTACCTCAACCTTTGGTGTTTCTCAATTGCCACGTGCGGTTCTTAGTCCCTTTGAAACTGAGAGGGCAAAGCTAGAGCAGTTGATGGCAGAGACTCGTGATGTTTTGTTAAGCAATGACTTTGTTCTCATACTAGAACAATCACTGAAGACTGTTTTGGACAGCATGATGGATGAGTTTAATACAATGTTTGAGGGAAGCGCTTCCAGCAGCATTCCTCTAGCTAAGCTTTTACCTCCAGTTGCCCATGCGAGCACTGTACTTCTTGAGCATCCTACCAAGAACAGGTTCATCAACATAATTGGGAAACTTCCACAAGTGCAATCATTTTTTGCTCTAGTTTATGCAAATGCTGGAGGGATATCATGA___TAGTCAATTTGTTTAGTTGCCCTTTGTATTTTAGTCATTTTTTCACATTTGCAGTGTAATTCTTCATGCTCTCATAAGTGGCAACAATATAGCATGGGGAGTTTCTGCTAATTATTTTCCACAATTGGAATAATGTTAACTTGTTATGGGGTATGCGTGCAAGGCATGTAGAGCAATTTTGTATATTTTTAAATGTTTAATATCATATTTTAGGTCTTAAGAATAGTT

Fln Alignment:

sp_v1.1_unigene9271___MSSIRFFVNKHRRKVLFTLGIVGGSYALYRFYCAQKERMLVLXXXXXXXXXXXXLVEIRLREHFESLQRMXXXXXXXXXXXXXXXHLLEALDYTELTERLNKGKGQLNPHEKLQLWERLKILSFTRTVCALWAMTVLNLYTRTQLNILGRHFFINQARGFENLEPVDQSIALCQQKFLGSADFLPQYGVTGLIVRMEKIVENVLESKHLREPLTVGELYDIFRRILNNFPSSSLHWINYVIPENGLLYQELSTGTSTFGVSQLPRAVLSPFETERAKLEQLMAETRDVLLSNDFVLILEQSLKTVLDSMMDEFNTMFEGSASSSIPLAKLLPPVAHASTVLLEHPTKNRFINIIGKLPQVQSFFALVYANAGGIS
B8LPM6______________MNSIRFFVNRHRRKVLFTLGIVGGGYALYRVYCAQKERMLVLEEEEEAERRADELVEIRLREHFESLQRMSDSSSLAAALDNLKDHLFEALDYSELTERLNKGKGHLIPQEKLELWERLKILSFTRTVCALWAMTVLNLYTRTQLNILGRHFFINQARGFENLESMDQSIALCQQKFLGSADFLPQYGVTGLIVRMEKIVENILESKHLREPLTVGELYDIFRRILNNFPSSSLQWINYVIPENGLLYQELSSGTSTFGVSQLPRAVLSPFETERAKLEQLMAETRDVLSSNDFALILEQSLKTVLDSMMEEFNTMFEGVTSGSIPLAKLLPPVSHASTVLLEHPTKNRFINIIGNLPQVQSFYALVYANAGGIS

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
164		14		85	0.993533
169			85	14	0.993533
170	85		14		0.993533
174		14		85	0.993533
180		14	85		0.993533
187		14	85		0.993533
188			85	14	0.993533
190	14	85			0.993533
217	28	71			1.0
219		85	14		0.993533
315			60	40	1.0
919			50	50	1.0
931			14	85	0.993533
935			85	14	0.993533
946	28		71		1.0
1428		14		85	0.999981
1430		85	14		0.999981
1432		14		85	0.999981
1434		14	85		0.999981
1609	89	10			0.999919
1610	10		89		0.999919
1613	89	10			0.999919
1825	16	83			0.994512
1827		83	16		0.994512
1828			16	83	0.994512
1829		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain