SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9259

Length: 2011 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9259
AGAACGCCCTCTAACACACAGATTGGACTGCCAGCCCTATTCTGGCAACGCCCATTTCGTACTTCTAAATCTGGAGGTGGTAGAGTGGTCAGAATGGCCGCTGTTTCAGTGGAAAAGAAGAAATACACCACCCAAAAGTCACAGGAGATCTTCACTGCTGCTCAGGAGTTAATGCCAGGAGGTCGTGAACTCACCAGTGAGAGCTTTCAACTCAGTCGGTGGGCAACCCATTATTTTTGATTCTGTAAAAGGCTCACATGCTTGGGATGTGGATGGAAATGAGTATGTTGATTATGTTGGCACATGGGGTCCATCAATAATTGGTCATGCTGATGATAAGGTTAATGCTGCTCTGATTGAAGCCCTGAGAAAAGGTACTAGCTTTGGTGCCCCATGCGTTGCAGAAAATGTTCTGGCTGAGATGGTTATTAAGGCAGTACCTAGCATAGAAATGGTCCGCTTTGTTAATTCAGGGACGGAAGCATGCATGGGCATGTTACGTTTGGCACGTGCCTTCACAGGTAGGGAGAAGCTAATTAAGTTTGAAGGCTGTTATCATGGTCATGCAGATCCTTTCTTGGTAAAAGCAGGAAGTGGTGTTGCAACTCTTGGGCTTCCTGATTCTCCGGGGGTCCCCAAAGCTGCCACATTTGAAACTCTTACAGCACCCTACAATGACATAAATGCTGTGGAGAAACTATTCAATGAAAACAAAGGAGAGATTGCTGCTGTGATTCTGGAGCCTGTAGTTGGCAATTCTGGTTTCATCTCCCCTGATAAGGGGTTTTTGCAGGGACTGCGGGAGGTTACAAGAGCAGATGGAGCACTTTTGGTCTTTGATGAGGTTATGACAGGCTTCAGAATAGCATATGGAGGTGCCCAAGAGTATTTTGGTATAACCCCAGACCTTACGACACTTGGGAAGATCATAGGAGGGGGGCTTCCAGTTGGGGCATATGGAGGCAGAAAGGAAATAATGATGATGGTAGCCCCAGCAGGGCCAATGTACCAGGCTGGAACACTGAGTGGGAACCCATTGGCCATGACTGCAGGAATATGCACCCTTCAGAGGTTGCAACAAACTGGTAGTTATGAATACCTGGATAAAGTAACTAGTCGGTTAGTGCAAGGTCTCCTTGAGGAGGGGAGGAATGCAGGTCATGAGATGTGCGGTGGACATATTCGTGGTATGTTTGGTTTTTTCTTTAACGCGGGGCCAGTCTTAAACTTTGCAGATGCGAAAAAAAGTGATACTGCCAAATTTGCAAGGTTTCACAGGGGTATGCTGGAGCAGGGTGTCTACCTTGCTCCCTCACAGTTTGAAGCTGGGTTTACGAGTTTAACTCACACTGAACAAGATATAGATTTCACCATAGCAGCAGCGAAAAGGGTTTTTGAGAGTATTTGAAATTGTCGTTAGCAGCTTTCCCTCCATAGAATAGTATAATTAGTGGAGAAATTCTTTGTAATCTATTTGTGTTTATTTTGCTTTATTTTTGTTAAAGCATTTTTGCTATGGAGAGGTCATTGTTCAATTCTCTTCCTACTCTCGGGTTCTCCTCACACTCTCAATTCTCTAACACTCTGGGGATTAGGTTCTATGGTTGGCCCAGTAAGAAGTGCTCATTTTGAGTGGATACCTGGTACAAATATTACTCCGTGGTAGTGGTGACCAATTTCCAGAGACTCTGCACCACATAAATAAATAAATAGAAGAGGAAAGGGTTCATTTATGCTTTTTCTTTATTATACTAGATTCATTAAATCGAATCAATTGGTGATGATGACAGACTGCCAATCCTCCAATACTTTCTCACTCAGCGTGTGCAGATTATAGAATTTGCACAACTTTTTCCGAGGAGCTCCATGTGGGTCTGGTGCGGAGCTCCCACGCCACAAGGAGAATGTGGGTACTACCACGGATTTATGTTCGAGGCATGAGCTTTGTCACAGCACAATCAAATTCAACACGATTAAATTAAGGAAATAAGTTTAGTCAAGAAAAAAACTT

Ace file of the UniGene sp_v1.1_unigene9259

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic n=6 Tax=Poaceae RepID=GSA_ORYSJ	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	glutamate 1-semialdehyde aminotransferase	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	89%

Source	InterPros	Term	Type	Identity
Blast2go	Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase	IPR004639	-	89%
Blast2go	Aminotransferase class-III	IPR005814	-	89%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	89%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	89%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	89%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLE9

Fln msg: Separated hits, possible frame ERROR between 183 and 185,

Fln protein: RTPSNTQIGLPALFWQRPFRTSKSGGGRVVRMAAVSVEKKKYTTQKSQEIFTAAQELMPGxxVNSPVRAFNSVGGQPIIFDSVKGSHAWDVDGNEYVDYVGTWGPSIIGHADDKVNAALIEALRKGTSFGAPCVAENVLAEMVIKAVPSIEMVRFVNSGTEACMGMLRLARAFTGREKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDINAVEKLFNENKGEIAAVILEPVVGNSGFISPDKGFLQGLREVTRADGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRKEIMMMVAPAGPMYQAGTLSGNPLAMTAGICTLQRLQQTGSYEYLDKVTSRLVQGLLEEGRNAGHEMCGGHIRGMFGFFFNAGPVLNFADAKKSDTAKFARFHRGMLEQGVYLAPSQFEAGFTSLTHTEQDIDFTIAAAKRVFESI*

Protein Length: 471

Fln nts: AGAACGCCCTCTAACACACAGATTGGACTGCCAGCCCTATTCTGGCAACGCCCATTTCGTACTTCTAAATCTGGAGGTGGTAGAGTGGTCAGAATGGCCGCTGTTTCAGTGGAAAAGAAGAAATACACCACCCAAAAGTCACAGGAGATCTTCACTGCTGCTCAGGAGTTAATGCCAGGAGGxxxCGTGAACTCACCAGTGAGAGCTTTCAACTCAGTCGGTGGGCAACCCATTATTTTTGATTCTGTAAAAGGCTCACATGCTTGGGATGTGGATGGAAATGAGTATGTTGATTATGTTGGCACATGGGGTCCATCAATAATTGGTCATGCTGATGATAAGGTTAATGCTGCTCTGATTGAAGCCCTGAGAAAAGGTACTAGCTTTGGTGCCCCATGCGTTGCAGAAAATGTTCTGGCTGAGATGGTTATTAAGGCAGTACCTAGCATAGAAATGGTCCGCTTTGTTAATTCAGGGACGGAAGCATGCATGGGCATGTTACGTTTGGCACGTGCCTTCACAGGTAGGGAGAAGCTAATTAAGTTTGAAGGCTGTTATCATGGTCATGCAGATCCTTTCTTGGTAAAAGCAGGAAGTGGTGTTGCAACTCTTGGGCTTCCTGATTCTCCGGGGGTCCCCAAAGCTGCCACATTTGAAACTCTTACAGCACCCTACAATGACATAAATGCTGTGGAGAAACTATTCAATGAAAACAAAGGAGAGATTGCTGCTGTGATTCTGGAGCCTGTAGTTGGCAATTCTGGTTTCATCTCCCCTGATAAGGGGTTTTTGCAGGGACTGCGGGAGGTTACAAGAGCAGATGGAGCACTTTTGGTCTTTGATGAGGTTATGACAGGCTTCAGAATAGCATATGGAGGTGCCCAAGAGTATTTTGGTATAACCCCAGACCTTACGACACTTGGGAAGATCATAGGAGGGGGGCTTCCAGTTGGGGCATATGGAGGCAGAAAGGAAATAATGATGATGGTAGCCCCAGCAGGGCCAATGTACCAGGCTGGAACACTGAGTGGGAACCCATTGGCCATGACTGCAGGAATATGCACCCTTCAGAGGTTGCAACAAACTGGTAGTTATGAATACCTGGATAAAGTAACTAGTCGGTTAGTGCAAGGTCTCCTTGAGGAGGGGAGGAATGCAGGTCATGAGATGTGCGGTGGACATATTCGTGGTATGTTTGGTTTTTTCTTTAACGCGGGGCCAGTCTTAAACTTTGCAGATGCGAAAAAAAGTGATACTGCCAAATTTGCAAGGTTTCACAGGGGTATGCTGGAGCAGGGTGTCTACCTTGCTCCCTCACAGTTTGAAGCTGGGTTTACGAGTTTAACTCACACTGAACAAGATATAGATTTCACCATAGCAGCAGCGAAAAGGGTTTTTGAGAGTATTTGAAATTGTCGTTAGCAGCTTTCCCTCCATAGAATAGTATAATTAGTGGAGAAATTCTTTGTAATCTATTTGTGTTTATTTTGCTTTATTTTTGTTAAAGCATTTTTGCTATGGAGAGGTCATTGTTCAATTCTCTTCCTACTCTCGGGTTCTCCTCACACTCTCAATTCTCTAACACTCTGGGGATTAGGTTCTATGGTTGGCCCAGTAAGAAGTGCTCATTTTGAGTGGATACCTGGTACAAATATTACTCCGTGGTAGTGGTGACCAATTTCCAGAGACTCTGCACCACATAAATAAATAAATAGAAGAGGAAAGGGTTCATTTATGCTTTTTCTTTATTATACTAGATTCATTAAATCGAATCAATTGGTGATGATGACAGACTGCCAATCCTCCAATACTTTCTCACTCAGCGTGTGCAGATTATAGAATTTGCACAACTTTTTCCGAGGAGCTCCATGTGGGTCTGGTGCGGAGCTCCCACGCCACAAGGAGAATGTGGGTACTACCACGGATTTATGTTCGAGGCATGAGCTTTGTCACAGCACAATCAAATTCAACACGATTAAATTAAGGAAATAAGTTTAGTCAAGAAAAAAACTT

Fln Alignment:

sp_v1.1_unigene9259___RTPSNTQIGLPALFWQRPFRTSKSGGGRVVRMAAVSVEKKKYTTQKSQEIFTAAQELMPGGxVNSPVRAFNSVGGQPIIFDSVKGSHAWDVDGNEYVDYVGTWGPSIIGHADDKVNAALIEALRKGTSFGAPCVAENVLAEMVIKAVPSIEMVRFVNSGTEACMGMLRLARAFTGREKLIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPYNDINAVEKLFNENKGEIAAVILEPVVGNSGFISPDKGFLQGLREVTRADGALLVFDEVMTGFRIAYGGAQEYFGITPDXXXXXXXXXXXXPVGAYGGRKEIMMMVAPAGPMYQAGTLSGNPLAMTAGICTLQRLQQTGSYEYLDKVTSRLVQGLLEEGRNAGHEMCGGHIRGMFGFFFNAGPVLNFADAKKSDTAKFARFHRGMLEQGVYLAPSQFEAGFTSLTHTEQDIDFTIA
B8LLE9______________KIPTNTQIGLPALFSQCPFSTAKSGGGKVVRMAAVSVEKKKYTTQKSQEIFTAAKELMPGGxVNSPVRAFNSVGGQPIVFDSVKGSHAWDVDGNEYIDYVGTWGPAIIGHADDKVNAALIEALKKGTSFGAPCFAENVLAEMVIKAVPSIEMVRFVNSGTEACMGMLRVARAFTCRGKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATFETLTAPFNDINAVEKLFNENKGEIAAVILEPVVGNSGFISPKKEFLQGLREVTRADGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRREIMKMVAPAGPVYQAGTLSGNPLAMTAGICTLQRLQQAGSYEYLDKITGRLVQGLLEVGRNAGHEMCGGHIRGMFGFFFNAGPVYNFADAKKSDTAKFARFHRGMLEQGVYLAPSQFEAGFTSLAHSEQDIDSTIA

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
263			14	85	0.993533
301		88		11	0.923564
800	16	83			0.994512
801			83	16	0.994512
804	83		16		0.994512
938			80	20	0.995493
939		20	80		0.995493
942	20			80	0.995493
943			20	80	0.995493
944		80		20	0.995493
945		80	20		0.995493
949	20			80	0.995493
950		20	80		0.995493
951	20		80		0.995493
955	80	20			0.995493
1008	85		14		0.993533
1283	72		27		1.0
1284	27			72	1.0
1285		27	72		1.0
1291	72			27	1.0
1296			72	27	1.0
1297		27	72		1.0
1298	27		72		1.0
1536	90		9		1.0
1537	90		3	6	0.997544
1538		6		93	0.999264
1540		90	9		1.0
1541	6			93	0.999264
1545		90	6	3	0.997544
1548	93			6	0.999264
1550	6			93	0.999264

SSRs (tot: 1)

Start position	End position	Sequence	Length
1698	1712	ATAA ATAA ATAA ATA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain