SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9246

Length: 3179 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9246
ATGGGGAGAGTTAATTTCAAATATAGCTCGAGTGGCTGCGACCGTATTTGTTTTGGAACTAGTATATCATGAAAGCGTGAGTGACCTTGTCTGGTACTCATTACGCTGCCCTGTTTAATTCAGATCTCCAATTGTGTCCAGGCCGCTGGACAAAATCCCCATCTGTGAACGACCTGAAGGATTATCTCAGGGTTGTTCACTGGATCGGCCCTCGATAAACTCTCAACTTGATAAGGGTTTTGGCCGATCCACAGAATGGATTTCATGAAGGTTTTCGATCAAACCGTCAGAGATATAAAGAGAGAGGTGAACAAGAAGGTTCTCAAGGTTCCTGAAATTGAACAGAAGGTTCTCGATGCAACAAGCAATGAACCTTGGGGTCCACATGGGTCGCTTATGGCGGAAATTGCTCAGGCTACAAGAAAATTTAACGAATCCCCATTGGTTATGGGTGTTCTTTGGACGAGGATAACTGATACTGGCAGGAACTGGCGTCATGTTTACAAGGCACTTACTGTATTGGAGTATTTGGTGGCTCATGGATCAGAGCGTATTATCGATGAGATTCGGGAGCATAACTACCAAATCTCGACACTTTCAGATTTCCAATATGTTGAGCCAAACGGAAAGGACCAGGGAATCAACGTGAGAAAGAAGGCTCAGACTATTGTATCTCTCATCAATGACAAAGAGAAAATACAAGAAGTGAGAGAAAAAGCAGCAGCCAATAGAGACAAATATTGTGGGCTGTCATCAACTGGAGGATTTCACAAGCCTAGTTCATACTCAGGCTTTGGTGGTGGATATGATGATGATCGACGTGATGATGATCGGTATGGAAGTCGAAATACGGGCAGTGACAAAGATTGGAAGAGTTGGGATGGAGATCGTTATGGTAGAGATGGTGGTGATGGTTACAGTAGGAGTGGAGATCGATACAAAGATGATGATTTTGGGAGAATCAGGGATCATGAAGATGTTCGAAATAACTCTAAAAACGAATATGATGATTACGTTTCTTCGAGGTATTCAAAAAAGCAGTCAGAAAGGAAATTGGAAGCTCCTCCTCGTTATCAAGACTCAATTGATGATCCTGGCTGTGAGGAAATGGCTCATGGTAGTGTGGCAGCTACTGCAACAAAATCATCAAGTTTAGGTCAAAGCCAGGTTGCTACAAGAAGTGAAAAGAATGTTGTAACAGCTTCAATTAATAGCGATGATGATTTTGATGACTTCAATCCTCGTGCCTCTTCTACATCAGCTGCTGCTTCTGTTCCAACTTTCACAGAGGATGACCTTTTTGGCCAGCCTTCAATGGGAGGGCGTACCGATGTCATGAAAGGAATACCTCCTCTGCCAAAGGCTGCAAATGCTCCTATTACTGCAGCTATGAGTGGTCCAAGCTCTGGGATAGATTTATTTGCAGACGCTAATTTAGGGCGTACGGATGTCATGAAAGGAATTCCTCCTCCACCAATGGCTGCAAATGCTCCTATTACTGCAGCTGTGAGTGGTCCAAACTCTGGGATAGATTTGTTTGCAGATGCTAATTTTAATGCGACTTTTGTGGCCCCATCAGTATCAGCCACCAACTCCCTTAATCAGCTTCCTGGTAATTTTAGTCAGTCTCAATATAACGCCCCTTTCCAATCACCTGAAGGCCTATTTGCTGCCCAAACATCAAGTACAGTATCTTTTACATCTCCCCTGACTTCTGGGATGAATGAAGGATCTGGTGCATTTGGAGCTGTGTCATCAAATTCCAATCCTCAGGCAGGTTTTGGCAATGCAGATCCCTTTGAAGGAAATTTATTCAGTGCCTTTGGAACTACTGTGCCTCCAGTGCAGGCCTCACAACCTCCCAGTATGTTTCAGACACAACCTTTGGCTCCAGCCGTAACTCAAGTATCGGAAAAACCTAATCTGCAATCTGCACAAGCTCAAAATTCAAGCACTACAGGTACTGCTAAATCTCAGCCACAGAAAGAAAAATTTCAACCGAAGTCATCAATCTGGGCCGACACATTAAGCCGTGGCTTAATTGACTTAAACATTACTGCACCAAAAAGCAATTCTCTGGCAAATATTGGCATCAATTTAGATTCCATTACTATGACGGAAAGGAAAGAAGACGAGAAGAAAACTTTCATGGGCTCTATGGGAAAACCCATGGGATCTGGTTCAGGCTTGGGTCGGGGAGGTGCAAGTACGTTAGCACCATCCGCTTCTCCTACGATGGGTACATATGGCACAGCTGTAGGCACAGGCTCTTATGGAGCAGGTGTGGGCATTGAAACAGGTATTGGTATGGGTGCTGGTGCTGGTTTGGGTATGCCAAAGGGACCTGAAGTGGGAATGACTCCAAGGATGGGCATGCCTGGAATGGGCTTGCAACCTCCCATGGGCATACCTGGAATGGGAATGCAACCTCCCATGGGCATGCCATCAGGAACTGGGACAGGGTTTGCAATGAACTATACAGTGGGCACAGGTCAGGGAGGCTTTCGTACTCAACAGCAACAGTTCGGTGGATTCAGTTGAGATTTTTTTTGTGAACCAATAATTTCTGAATCTGTTACCGTATTAAAGTGTTGGCTAATTGATCCCAATATTCACACTTTTGTAGTGAAGTAGTTATTTGGCATGTCACAAATATTATTTTCATGTATGTACAGGAGCTTATTGAGTCTCCTGAATGGAGATAAAGTACCATCAAGCTCAAAATATAAGCAGTAATTGAGCTGACAACAGTGTTGAAGAGCACTAGAAAAATTCGGTAACTTTTGTAGATTGATTTATTTTGTGCATAACATGCTCGGATCATGAAGGCTGCGCAGAAGATCTTGAAGATCTTAGTTCGCTTTTTCAAAGTCCATTGTTACCTTTTTATCTCAAACGTTTATTGGTACTGAAAATGTTACTTATTTTGTATGAATCTTGTTACGAGTTATGTTGAATATGCTACAACTCAGTAATGTTTGAGATTTATGTGATGTTGTTAGCATTTGTCATTTTTTCGTTAGAGGAATTACTGCTTGTACATTTTATACAGATGTCGAACTGAATGATTTAGTTGGCAAGCTAGATTTCTAGCTGTTTCCTTTGTGTTACTGAAACGGACTTTTCTGCCTGATTACTGTTTAGGCGAGTATTTTGAACTGCTTCAACTTATGTGAACT

Ace file of the UniGene sp_v1.1_unigene9246

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Clathrin interactor, putative	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	71%
Blast2go	protein binding	GO:0005515	Molecular Function	71%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	71%
Blast2go	actin filament	GO:0005884	Cellular Component	71%
Blast2go	thylakoid	GO:0009579	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Blast2go	Epsin domain, N-terminal	IPR001026	-	71%
Blast2go	ENTH/VHS	IPR008942	-	71%
Blast2go	Epsin-like, N-terminal	IPR013809	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLE6

Fln msg: your sequence is longer than subject: 762 - 402

Fln protein: MDFMKVFDQTVRDIKREVNKKVLKVPEIEQKVLDATSNEPWGPHGSLMAEIAQATRKFNESPLVMGVLWTRITDTGRNWRHVYKALTVLEYLVAHGSERIIDEIREHNYQISTLSDFQYVEPNGKDQGINVRKKAQTIVSLINDKEKIQEVREKAAANRDKYCGLSSTGGFHKPSSYSGFGGGYDDDRRDDDRYGSRNTGSDKDWKSWDGDRYGRDGGDGYSRSGDRYKDDDFGRIRDHEDVRNNSKNEYDDYVSSRYSKKQSERKLEAPPRYQDSIDDPGCEEMAHGSVAATATKSSSLGQSQVATRSEKNVVTASINSDDDFDDFNPRASSTSAAASVPTFTEDDLFGQPSMGGRTDVMKGIPPLPKAANAPITAAMSGPSSGIDLFADANLGRTDVMKGIPPPPMAANAPITAAVSGPNSGIDLFADANFNATFVAPSVSATNSLNQLPGNFSQSQYNAPFQSPEGLFAAQTSSTVSFTSPLTSGMNEGSGAFGAVSSNSNPQAGFGNADPFEGNLFSAFGTTVPPVQASQPPSMFQTQPLAPAVTQVSEKPNLQSAQAQNSSTTGTAKSQPQKEKFQPKSSIWADTLSRGLIDLNITAPKSNSLANIGINLDSITMTERKEDEKKTFMGSMGKPMGSGSGLGRGGASTLAPSASPTMGTYGTAVGTGSYGAGVGIETGIGMGAGAGLGMPKGPEVGMTPRMGMPGMGLQPPMGIPGMGMQPPMGMPSGTGTGFAMNYTVGTGQGGFRTQQQQFGGFS*

Protein Length: 763

Fln nts: ATGGGGAGAGTTAATTTCAAATATAGCTCGAGTGGCTGCGACCGTATTTGTTTTGGAACTAGTATATCATGAAAGCGTGAGTGACCTTGTCTGGTACTCATTACGCTGCCCTGTTTAATTCAGATCTCCAATTGTGTCCAGGCCGCTGGACAAAATCCCCATCTGTGAACGACCTGAAGGATTATCTCAGGGTTGTTCACTGGATCGGCCCTCGATAAACTCTCAACTTGATAAGGGTTTTGGCCGATCCACAGA_-_ATGGATTTCATGAAGGTTTTCGATCAAACCGTCAGAGATATAAAGAGAGAGGTGAACAAGAAGGTTCTCAAGGTTCCTGAAATTGAACAGAAGGTTCTCGATGCAACAAGCAATGAACCTTGGGGTCCACATGGGTCGCTTATGGCGGAAATTGCTCAGGCTACAAGAAAATTTAACGAATCCCCATTGGTTATGGGTGTTCTTTGGACGAGGATAACTGATACTGGCAGGAACTGGCGTCATGTTTACAAGGCACTTACTGTATTGGAGTATTTGGTGGCTCATGGATCAGAGCGTATTATCGATGAGATTCGGGAGCATAACTACCAAATCTCGACACTTTCAGATTTCCAATATGTTGAGCCAAACGGAAAGGACCAGGGAATCAACGTGAGAAAGAAGGCTCAGACTATTGTATCTCTCATCAATGACAAAGAGAAAATACAAGAAGTGAGAGAAAAAGCAGCAGCCAATAGAGACAAATATTGTGGGCTGTCATCAACTGGAGGATTTCACAAGCCTAGTTCATACTCAGGCTTTGGTGGTGGATATGATGATGATCGACGTGATGATGATCGGTATGGAAGTCGAAATACGGGCAGTGACAAAGATTGGAAGAGTTGGGATGGAGATCGTTATGGTAGAGATGGTGGTGATGGTTACAGTAGGAGTGGAGATCGATACAAAGATGATGATTTTGGGAGAATCAGGGATCATGAAGATGTTCGAAATAACTCTAAAAACGAATATGATGATTACGTTTCTTCGAGGTATTCAAAAAAGCAGTCAGAAAGGAAATTGGAAGCTCCTCCTCGTTATCAAGACTCAATTGATGATCCTGGCTGTGAGGAAATGGCTCATGGTAGTGTGGCAGCTACTGCAACAAAATCATCAAGTTTAGGTCAAAGCCAGGTTGCTACAAGAAGTGAAAAGAATGTTGTAACAGCTTCAATTAATAGCGATGATGATTTTGATGACTTCAATCCTCGTGCCTCTTCTACATCAGCTGCTGCTTCTGTTCCAACTTTCACAGAGGATGACCTTTTTGGCCAGCCTTCAATGGGAGGGCGTACCGATGTCATGAAAGGAATACCTCCTCTGCCAAAGGCTGCAAATGCTCCTATTACTGCAGCTATGAGTGGTCCAAGCTCTGGGATAGATTTATTTGCAGACGCTAATTTAGGGCGTACGGATGTCATGAAAGGAATTCCTCCTCCACCAATGGCTGCAAATGCTCCTATTACTGCAGCTGTGAGTGGTCCAAACTCTGGGATAGATTTGTTTGCAGATGCTAATTTTAATGCGACTTTTGTGGCCCCATCAGTATCAGCCACCAACTCCCTTAATCAGCTTCCTGGTAATTTTAGTCAGTCTCAATATAACGCCCCTTTCCAATCACCTGAAGGCCTATTTGCTGCCCAAACATCAAGTACAGTATCTTTTACATCTCCCCTGACTTCTGGGATGAATGAAGGATCTGGTGCATTTGGAGCTGTGTCATCAAATTCCAATCCTCAGGCAGGTTTTGGCAATGCAGATCCCTTTGAAGGAAATTTATTCAGTGCCTTTGGAACTACTGTGCCTCCAGTGCAGGCCTCACAACCTCCCAGTATGTTTCAGACACAACCTTTGGCTCCAGCCGTAACTCAAGTATCGGAAAAACCTAATCTGCAATCTGCACAAGCTCAAAATTCAAGCACTACAGGTACTGCTAAATCTCAGCCACAGAAAGAAAAATTTCAACCGAAGTCATCAATCTGGGCCGACACATTAAGCCGTGGCTTAATTGACTTAAACATTACTGCACCAAAAAGCAATTCTCTGGCAAATATTGGCATCAATTTAGATTCCATTACTATGACGGAAAGGAAAGAAGACGAGAAGAAAACTTTCATGGGCTCTATGGGAAAACCCATGGGATCTGGTTCAGGCTTGGGTCGGGGAGGTGCAAGTACGTTAGCACCATCCGCTTCTCCTACGATGGGTACATATGGCACAGCTGTAGGCACAGGCTCTTATGGAGCAGGTGTGGGCATTGAAACAGGTATTGGTATGGGTGCTGGTGCTGGTTTGGGTATGCCAAAGGGACCTGAAGTGGGAATGACTCCAAGGATGGGCATGCCTGGAATGGGCTTGCAACCTCCCATGGGCATACCTGGAATGGGAATGCAACCTCCCATGGGCATGCCATCAGGAACTGGGACAGGGTTTGCAATGAACTATACAGTGGGCACAGGTCAGGGAGGCTTTCGTACTCAACAGCAACAGTTCGGTGGATTCAGTTGA___GATTTTTTTTGTGAACCAATAATTTCTGAATCTGTTACCGTATTAAAGTGTTGGCTAATTGATCCCAATATTCACACTTTTGTAGTGAAGTAGTTATTTGGCATGTCACAAATATTATTTTCATGTATGTACAGGAGCTTATTGAGTCTCCTGAATGGAGATAAAGTACCATCAAGCTCAAAATATAAGCAGTAATTGAGCTGACAACAGTGTTGAAGAGCACTAGAAAAATTCGGTAACTTTTGTAGATTGATTTATTTTGTGCATAACATGCTCGGATCATGAAGGCTGCGCAGAAGATCTTGAAGATCTTAGTTCGCTTTTTCAAAGTCCATTGTTACCTTTTTATCTCAAACGTTTATTGGTACTGAAAATGTTACTTATTTTGTATGAATCTTGTTACGAGTTATGTTGAATATGCTACAACTCAGTAATGTTTGAGATTTATGTGATGTTGTTAGCATTTGTCATTTTTTCGTTAGAGGAATTACTGCTTGTACATTTTATACAGATGTCGAACTGAATGATTTAGTTGGCAAGCTAGATTTCTAGCTGTTTCCTTTGTGTTACTGAAACGGACTTTTCTGCCTGATTACTGTTTAGGCGAGTATTTTGAACTGCTTCAACTTATGTGAACT

Fln Alignment:

sp_v1.1_unigene9246___IHRMDFMKVFDQTVRDIKREVNKKVLKVPEIEQKVLDATSNEPWGPHGSLMAEIAQATRKFNESPLVMGVLWTRIT--DTGRNWRHVYKALTVLEYLVAHGSERIIDEIREHNYQISTLSDFQYVEPNGKDQGINVRKKAQTIVSLINDKEKIQEVREKA
B8LLE6______________LHLGQFKKQASFFIREKLKTARLVLTDVTEAELMTEEATNNDPWGPETRRMAEISRAAFEVDDYSRIVNILHKRLSVLDT-KSWRETFKTLVLLEYLLTHGPESFAADFRSEKDVLHQLTHFQHVDDLGFDWGQSIQRKAERILELLNQEKLLKEERNRA

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
996	57		42		1.0
1006		87		12	0.992554
1009	87		12		0.992554
1010			12	87	0.992554
1181	83		16		0.994512
1297	16		83		0.994512
1435		66		33	1.0
1453	12		87		0.992554
1893			20	80	0.995493
1903	80	20			0.995493
2277	11	88			0.923564
2279			11	88	0.923564
2280	88		11		0.923564
2281			11	88	0.923564
2290	11			88	0.923564
2323		88		11	0.923564
2332		88		11	0.923564
2371	90		10		0.90298
2380		90		10	0.90298
2628		83		16	0.994512
2693	80		20		0.995493
2976		10		90	0.90298
2979	11		88		0.923564
2992	20			80	0.995493
3065		33	66		0.997452
3108	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain