SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9235

Length: 1154 nt

Origin of reads: Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9235 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	-	-	2.0e-08	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	protein	-	-	0.0	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSC2

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MQLFKTAIEILWKILNFPVNFQKGEGTKQKQRQRQHHFVFIHGLGHGAWCWYKVVSLLEKEGHRAVALDLTSNGINKAASAEVNSLAKYSQPLIEYLESLDNEMVTLVGHSMGGCVLPYAMELYPHKVSKAVFIAGYMPRNNQSFLSSAYPQAFPRLVSNGVVSLKYSKEGAQHPMSVFFNFDHLRSYLYNESPEEVVILAKSLLTPAPYPVAEEVLKLTEEKYGRVRRFYIMTMKDNLFLPQHQEITVTSNPPERVFALPASDHSPFYSCPLQLCNLLIHIATL*

Protein Length: 287

Fln nts: GTCTTATGCAAGGTACCCACTATCATTAGACCTAGGTTTAGTCTTTTGATTAAGGATCCATATCCATGTGAAAGAGTTTTCAAGTTTTGATGCAAT_-_ATGCAGCTGTTCAAAACAGCCATTGAAATCCTATGGAAAATCTTAAACTTTCCAGTGAATTTTCAGAAAGGAGAGGGAACAAAGCAGAAGCAGCGGCAGCGGCAGCATCATTTTGTGTTCATCCATGGTCTCGGACACGGAGCTTGGTGTTGGTACAAAGTTGTTTCCTTGCTGGAGAAAGAGGGCCACAGAGCAGTAGCTCTGGATCTCACTTCCAATGGCATTAACAAGGCTGCCTCTGCAGAAGTCAACTCTCTTGCAAAATACTCCCAACCTCTCATTGAATACCTTGAATCCCTGGACAACGAGATGGTGACTCTCGTGGGCCACAGCATGGGCGGATGCGTACTTCCATATGCAATGGAATTATATCCGCACAAGGTCTCCAAGGCTGTTTTCATTGCCGGATACATGCCCCGCAATAATCAGAGCTTCCTCAGCTCGGCATACCCTCAGGCCTTTCCAAGACTGGTAAGCAATGGGGTTGTTTCTTTAAAGTACTCCAAAGAAGGCGCGCAGCACCCTATGTCTGTTTTTTTCAATTTTGACCACTTGAGATCCTATCTTTACAACGAGAGCCCAGAGGAGGTAGTGATTCTAGCGAAGTCTCTTCTGACGCCTGCGCCATATCCTGTTGCAGAGGAGGTGTTGAAGTTAACAGAGGAGAAGTATGGGCGAGTGCGGAGATTCTACATCATGACGATGAAAGACAATTTATTTCTCCCACAACACCAGGAAATCACTGTTACAAGCAATCCTCCCGAAAGGGTATTCGCATTACCGGCCAGCGACCATTCCCCTTTCTATTCATGTCCCCTGCAGCTCTGCAATCTGCTAATTCATATCGCCACCCTCTGAACATTTTTACCCAATCACTCCGCACGTTGTTTCATGGATAGTTATGGATGTAATAGAACCGTTGTTTTTATACAAGTTCGTATCATTGGCGTTGTATGGATGAAACGAAGTAATTACATGTAGTATATTGAAGATCAGAAAATATGTATGTATCCGTGTCATCTTGGAAATAGAAAACAGCCCGTTGTAAAAATAATTAT

Fln Alignment:

sp_v1.1_unigene9235___TAIEILWKILNFPVNFQKGEGTKQKQRQRQHHFVFIHGLGHGAWCWYKVVSLLEKEGHRAVALDLTSNGINKAASAE-VNSLAKYSQPLIEYLESL-DNEMVTLVGHSMGGCVLPYAMELYPHKVSKAVFIAGYMPRNNQSFLSSAYPQAFPRLVSNGVVSLKYSKEGAQHPMSVFFNFDHLRSYLYNESPEEVVILAKSLLTPAPYPVAEEVLKLTEEKYGRVRRFYIMTMKDNLFLPQHQEITVTSNPPERVFALPASDHSPFYSCPLQLCNLLIHIATL
A9NSC2______________TVVTLSVMLLLVSIHLQEGEG-------RQQHFVLIHGLGHVAWCWYKIVTLLKQKGHRVAALDLTSNGINRAASTDQVNSIAHYAEPLLEYIRNLGNNEKVTLVGHSLAGCPLSYAMELYPSKITKAIFVAAFTPRNNQSFLSSANPKSFARLVENGVLVLNV-KADSELPTSASLVLDHVKSYLYNESPDEDANLAQSLLTPTPFPVSVEFLKLSEERYESIRRFYIMLMKDRLFPPEYQEYSIAQNPPEKIFKMHASDHSPFFSQPQQLCNLLVHIATL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
628	25		75		0.996473
629		75	25		0.996473
630	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain