SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9203

Length: 2418 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9203
GGCTGGATGGTCCGATATGGCCGTCGCAAGATCGGGCGCTCTTTCATCCATAAGAGATATTTTGTTCTCGAGTCCCGGGTTCTTGCCTATTACAAACGAAAACCTCTCGAAAACGAGGTTCCGATCAAGTCCCTTCTCATAGACGGCAAGACCAGAGCGGACAATCAGGGATTGGAGACACATCATGGACATATGGTCTATGTTCTATCTGTCTATAACAAGAAAGACAAGTCACATCGGATTACGATGGCTTCATTTATTCTTCAGGATGCTTTGTCGTGGAAGGAAAAGATTGAACTTGTAATTGATCAGCATAGTTCACTAGCAGCCAATGGAAGCAAGGCATATGCAACTCCAGAGTACAAGTCAAATGTGGACAATGAAAGGAGTGCTTCATCATCTGAACATGAAAGTCAGTTCAGTGCACAAGAGGATGATGACGATAAGCGACCAAGTATTGCCCGAAGAATAACGATAGGAAATGGACCTCCTGAGTCGGTGCTCGATTGGACCAGGGAAATTGACTCAGGTTCTTACTATCAAAATAATCACGATCAAGGTTTCTCAAGAAAGCACTGGCGCCTGGTTCGGTGCCAAAATGGACTTCGGATCTTTGAAGAGCTTCTGGAGGCTGACTACTTGCCACAGAGCTGCAGCAGAGCTATGAAGGCAGTTGGTGTTGTGGATGCTCCTTGTGATGCGATTTTTAAGCTTGTCATGGGGATGGATGAAACTCGATATGAATGGGATTGCAGTTTTAACCATGGAAGCATGGTAGAAGAGGTAGATGGTCATACTGCAATTCTATATCACAGGTTGCAGCTGGACTGGTTTCCGATGTTTGTATGGCGACGTGATTTGTGCTACGTACGCTACTGGCGACGAAACGATGATGGAAGTTATGTTGTTCTATTTCGCTCAAGGGAACATGCAAACTGCCCTCCACAACCTGGTTTTGTACGAGCCAATATTGAGAGTGGGGGATTTACCATAAATCCTTTGAAGCCATGTAAGAAAGGAGAACCTCGATCCCGAGTCCAACATCTTATGCAAATTGACTTGAAGGGTTGGGGTGTTGGTTATTTGCCTAGCTTCAAGCAGCATTGCCTGCTTCAAATGTTAAATAGTGTTGCTGGTTTGCGTGAGTGGTTCTCTCAGAGAGATGATTGTGATGAGTTGCCACACATCCAAATAATGGCAAACATGCGCTCTGATCTTGTATCAAAGAAAGGTCAGAAACGACAAGCAGCCCCCATTAAACCTAGTCCATCTGTAGATCAAATGCCCAGAGGTAGTGAAATTCCAGATGAAGAGTCAGATGAAGATGAGGATTTCCAAGTTCCTGATCAAGAGATGGATTCACAAAAGTCCCCAAAGGAAATAAAAAACACAGTAACCAAAGCGGGGGAGGAGGAATTAACTGATGCTCTTGATTTATCATGCTTCTCTGGTTCATTGCGGCGAGATGATAGGGATGCAGGGCGTGACTGCTGGACGATTCCAGATGCAAAGAGCTTTCGAGTTCGTAGCAAACGTTTCATCTTTGATGGATCTAAGGTCCCAGCTGGGCAGCCTTTAATGCAGCTTGTTGCAGTTGACTGGTTTAAAGGTGTGAAACGGATGGACCATCTCGCTAGACGGAAGGGTTGTGCAGCACAGATTGCTGCAGAAAAGGGACTATTTTCACTGGTTATAAACCTCCAAGTACCCGGCTCGACACACTATAGCATGGTCATATATTTCATATCGAAGCAGTTGCTGCCAGGGTCACTATTGCAGCGTTTTGTAGATGGCGATGATGAATTTAGGAATAGCAGGCTGAAGCTTATTCCATCTGTTCCAAAGGGTTCCTGGATTGTCAGGCAGAGTGTTGGGAGTACACCTTGTATTTTGGGCAAGGCAGTTGATTGTAATTATTACCGTGGGCAAAAGTACCTAGAGGTAGATGTTGATATAGGTTCTTCAACTGTTGCTAATGGAGTGCTGGGTTTAGTTTTGGGAGTTGTGACGACGTTGGTGGTTGATATGGCTTTCCTTGTTCAGGGAAATAGCATGGATGAGCTACCTGAACACTTGATTGGTGCTCTGCGTGTATCTCGACTTGAACTTTCTAGTGCAGTGGTGCCATCATTGGAATCCAGTTCATCGTAGTCTTTTAGGGTCTAATAGGCTAATTTGAATGTTGACAGTGGCAGTAATGAAGCACATTGGATTCTTTGTACAACAAGAACTTGAATAAACTCTTAGGGTGATGTTAAATTCATGCAGATGAGGTCATCATGGGTGACACTCGTAGGAATTAAAAATTTAAAATAACACTACAAGGCAATGATGTTTTAGCCTCACATCCCTGATAGATCAATGCCAGATCAAGGGCAGTGCTATGTAAGAATCATTTCTAAGTCGAGCATATTACAT

Ace file of the UniGene sp_v1.1_unigene9203

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S1J0_RICCO	-	-	68%
FL-Next	tr=Lipid binding protein, putative; Ricinus communis (Castor bean).	-	-	72%
Blast2go	lipid binding	-	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9S1J0

Fln msg: atg_distance in limit (1-15): atg_distance = 8,

Fln protein: MVRYGRRKIGRSFIHKRYFVLESRVLAYYKRKPLENEVPIKSLLIDGKTRADNQGLETHHGHMVYVLSVYNKKDKSHRITMASFILQDALSWKEKIELVIDQHSSLAANGSKAYATPEYKSNVDNERSASSSEHESQFSAQEDDDDKRPSIARRITIGNGPPESVLDWTREIDSGSYYQNNHDQGFSRKHWRLVRCQNGLRIFEELLEADYLPQSCSRAMKAVGVVDAPCDAIFKLVMGMDETRYEWDCSFNHGSMVEEVDGHTAILYHRLQLDWFPMFVWRRDLCYVRYWRRNDDGSYVVLFRSREHANCPPQPGFVRANIESGGFTINPLKPCKKGEPRSRVQHLMQIDLKGWGVGYLPSFKQHCLLQMLNSVAGLREWFSQRDDCDELPHIQIMANMRSDLVSKKGQKRQAAPIKPSPSVDQMPRGSEIPDEESDEDEDFQVPDQEMDSQKSPKEIKNTVTKAGEEELTDALDLSCFSGSLRRDDRDAGRDCWTIPDAKSFRVRSKRFIFDGSKVPAGQPLMQLVAVDWFKGVKRMDHLARRKGCAAQIAAEKGLFSLVINLQVPGSTHYSMVIYFISKQLLPGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCILGKAVDCNYYRGQKYLEVDVDIGSSTVANGVLGLVLGVVTTLVVDMAFLVQGNSMDELPEHLIGALRVSRLELSSAVVPSLESSSS*

Protein Length: 716

Fln nts: GGCTGG_-_ATGGTCCGATATGGCCGTCGCAAGATCGGGCGCTCTTTCATCCATAAGAGATATTTTGTTCTCGAGTCCCGGGTTCTTGCCTATTACAAACGAAAACCTCTCGAAAACGAGGTTCCGATCAAGTCCCTTCTCATAGACGGCAAGACCAGAGCGGACAATCAGGGATTGGAGACACATCATGGACATATGGTCTATGTTCTATCTGTCTATAACAAGAAAGACAAGTCACATCGGATTACGATGGCTTCATTTATTCTTCAGGATGCTTTGTCGTGGAAGGAAAAGATTGAACTTGTAATTGATCAGCATAGTTCACTAGCAGCCAATGGAAGCAAGGCATATGCAACTCCAGAGTACAAGTCAAATGTGGACAATGAAAGGAGTGCTTCATCATCTGAACATGAAAGTCAGTTCAGTGCACAAGAGGATGATGACGATAAGCGACCAAGTATTGCCCGAAGAATAACGATAGGAAATGGACCTCCTGAGTCGGTGCTCGATTGGACCAGGGAAATTGACTCAGGTTCTTACTATCAAAATAATCACGATCAAGGTTTCTCAAGAAAGCACTGGCGCCTGGTTCGGTGCCAAAATGGACTTCGGATCTTTGAAGAGCTTCTGGAGGCTGACTACTTGCCACAGAGCTGCAGCAGAGCTATGAAGGCAGTTGGTGTTGTGGATGCTCCTTGTGATGCGATTTTTAAGCTTGTCATGGGGATGGATGAAACTCGATATGAATGGGATTGCAGTTTTAACCATGGAAGCATGGTAGAAGAGGTAGATGGTCATACTGCAATTCTATATCACAGGTTGCAGCTGGACTGGTTTCCGATGTTTGTATGGCGACGTGATTTGTGCTACGTACGCTACTGGCGACGAAACGATGATGGAAGTTATGTTGTTCTATTTCGCTCAAGGGAACATGCAAACTGCCCTCCACAACCTGGTTTTGTACGAGCCAATATTGAGAGTGGGGGATTTACCATAAATCCTTTGAAGCCATGTAAGAAAGGAGAACCTCGATCCCGAGTCCAACATCTTATGCAAATTGACTTGAAGGGTTGGGGTGTTGGTTATTTGCCTAGCTTCAAGCAGCATTGCCTGCTTCAAATGTTAAATAGTGTTGCTGGTTTGCGTGAGTGGTTCTCTCAGAGAGATGATTGTGATGAGTTGCCACACATCCAAATAATGGCAAACATGCGCTCTGATCTTGTATCAAAGAAAGGTCAGAAACGACAAGCAGCCCCCATTAAACCTAGTCCATCTGTAGATCAAATGCCCAGAGGTAGTGAAATTCCAGATGAAGAGTCAGATGAAGATGAGGATTTCCAAGTTCCTGATCAAGAGATGGATTCACAAAAGTCCCCAAAGGAAATAAAAAACACAGTAACCAAAGCGGGGGAGGAGGAATTAACTGATGCTCTTGATTTATCATGCTTCTCTGGTTCATTGCGGCGAGATGATAGGGATGCAGGGCGTGACTGCTGGACGATTCCAGATGCAAAGAGCTTTCGAGTTCGTAGCAAACGTTTCATCTTTGATGGATCTAAGGTCCCAGCTGGGCAGCCTTTAATGCAGCTTGTTGCAGTTGACTGGTTTAAAGGTGTGAAACGGATGGACCATCTCGCTAGACGGAAGGGTTGTGCAGCACAGATTGCTGCAGAAAAGGGACTATTTTCACTGGTTATAAACCTCCAAGTACCCGGCTCGACACACTATAGCATGGTCATATATTTCATATCGAAGCAGTTGCTGCCAGGGTCACTATTGCAGCGTTTTGTAGATGGCGATGATGAATTTAGGAATAGCAGGCTGAAGCTTATTCCATCTGTTCCAAAGGGTTCCTGGATTGTCAGGCAGAGTGTTGGGAGTACACCTTGTATTTTGGGCAAGGCAGTTGATTGTAATTATTACCGTGGGCAAAAGTACCTAGAGGTAGATGTTGATATAGGTTCTTCAACTGTTGCTAATGGAGTGCTGGGTTTAGTTTTGGGAGTTGTGACGACGTTGGTGGTTGATATGGCTTTCCTTGTTCAGGGAAATAGCATGGATGAGCTACCTGAACACTTGATTGGTGCTCTGCGTGTATCTCGACTTGAACTTTCTAGTGCAGTGGTGCCATCATTGGAATCCAGTTCATCGTAG___TCTTTTAGGGTCTAATAGGCTAATTTGAATGTTGACAGTGGCAGTAATGAAGCACATTGGATTCTTTGTACAACAAGAACTTGAATAAACTCTTAGGGTGATGTTAAATTCATGCAGATGAGGTCATCATGGGTGACACTCGTAGGAATTAAAAATTTAAAATAACACTACAAGGCAATGATGTTTTAGCCTCACATCCCTGATAGATCAATGCCAGATCAAGGGCAGTGCTATGTAAGAATCATTTCTAAGTCGAGCATATTACAT

Fln Alignment:

sp_v1.1_unigene9203___GWMVRYGRRKIGRSFIHKRYFVLESRVLAYYKRKPLENEVPIKSLLIDGKTRADNQGLETHHGHMVYVLSVYNKKDKSHRITMASFILQDALSWKEKIELVIDQHS-SLAANGSKAYATPEYKSNVDNXXXXXXXXXXXXXXXXXDDDDKRPSIARRITIGNGPPESVLDWTREIDSGSYYQNNHDQGFSRKHWRLVRCQNGLRIFEELLEADYLPQSCSRAMKAVGVVDAPCDAIFKLVMGMDETRYEWDCSFNHGSMVEEVDGHTAILYHRLQLDWFPMFVWRRDLCYVRYWRRNDDGSYVVLFRSREHANCPPQPGFVRANIESGGFTINPLKPCKKGEPRSRVQHLMQIDLKGWGVGYLPSFKQHCLLQMLNSVAGLREWFSQRDDCDELPHIQIMANMRSDLVS-KKGQKRQAAPIKPSPSVDQM---PRGSEIPXXXXXXXXXFQVPDQEMDSQKSPKEIKNTVTKAG-EEELTDALDLSCFSGSLRRDDRDAGRDCWTIPDAKSFRVRSKRFIFDGSKVPAGQPLMQLVAVDWFKGVKRMDHLARRKGCAAQIAAEKGLFSLVINLQVPGSTHYSMVIYFISKQLLPGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCILGKAVDCNYYRGQKYLEVDVDIGSSTVANXXXXXXXXXXXXXXXDMAFLVQGNSMDELPEHLIGALRVS
B9S1J0______________GWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKRKPQDNQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIEFVIDQHQESQVVNGNK-YISFEYKSGMDNGRTASSSDHESQFSAQEDEDDANPNLLRRTTIGNGPPDSVLDWTREVDSELSTQNANNQAFSRKHWRLLQCQNGLRIFEELVEVDYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPAFIWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGCVRAHVESGGFNIAPLKP-RNGRPRTQVQHLMQIDLKGWGVGYVSSFQQHCLLQMLNSVAGLREWFSQTDERGAPPRIPVMVNMASASASTKKNFKLQESSVHPAPSLDQINAASRNSTIMDEYSDEDEEYQIAEEEQEAYQTKKENENDMRRTALEEEPVEPIDLSCFSGNLRRDDRDKARDCWRISDGNNFRVRSKHFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRQGCAAQVASEKGLFSVVFNLQVPGSTHYSMVFYFVTKELIPGSLLQRFVDGDDEFRNSRFKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEVDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANTTEELPERLIGAVRVS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
61		33		66	0.997452
137		25		75	0.996473
681		16		83	0.994512
684		16	83		0.994512
689	16	83			0.994512
701		81		18	0.999994
704		20		80	0.999996
707	10			90	0.90298
710	90	10			0.90298
711			90	10	0.90298
713	10			90	0.90298
1470			25	75	0.996473
1471	75		25		0.996473
1477	50		50		1.0
1657	80		20		0.995493
1674	75		25		0.996473
1991		25	75		0.996473
1995		25		75	0.996473
1997		25	75		0.996473
2000	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain