SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9190

Length: 833 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9190 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Exocyst componenet sec8, putative n=1 Tax=Ricinus communis RepID=B9RRM4_RICCO	-	-	63%
FL-Next	sp=Probable exocyst complex component 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	pollen germination	GO:0009846	Biological Process	69%
Blast2go	pollen tube growth	GO:0009860	Biological Process	69%
Blast2go	exocyst	GO:0000145	Cellular Component	69%
Blast2go	cytosol	GO:0005829	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sec8 exocyst complex component specific domain	IPR007191	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93YU5

Fln msg: Distance to subject end: 725 aas, your sequence is shorter than subject: 277 - 1053

Fln protein: DEVVHGYHSGFNKAIHNYSQILRLFSESAESIAGLKSELGEAKKLLGSRNKQLHQLWYRSVTLRHIISLLDQIDNVAKVPARIDKLIAEKQYYAAVQLHLQSTSMLEREGIQGVGALQDVRSELSKLRGVLFYKVVEDLHNHLYNKGEYSSNPTIVDEKDDDIPTLTASGITSGSLHPVSRRTRTMRRSDHNGDSFQLADGFHRAGSVDGSSSIDYREDESVHTGDYPDGGASDGLSSWAGVNGSEALSKDFRSMGFKMPLWLSNSTPNEFTEAMKK

Protein Length: 278

Fln nts: TCGATGAAGTTGTCCATGGGTATCACAGTGGCTTCAACAAAGCTATTCACAACTATTCTCAGATTCTGCGGTTATTCAGTGAGTCTGCTGAAAGCATTGCTGGGTTGAAAAGTGAATTGGGAGAGGCAAAGAAACTCCTTGGTTCTCGAAACAAGCAACTGCATCAACTTTGGTATCGCTCTGTTACGTTGCGCCATATTATTTCTTTACTGGATCAGATTGACAATGTGGCAAAGGTTCCAGCACGTATTGATAAACTTATTGCAGAGAAACAATATTATGCAGCAGTGCAACTTCATCTGCAATCCACATCTATGCTTGAGCGAGAGGGTATTCAAGGGGTTGGTGCATTGCAAGATGTCCGCTCGGAACTTTCTAAGTTACGTGGAGTTCTATTTTATAAAGTAGTGGAAGACTTGCATAATCATCTTTACAATAAGGGAGAATACAGCTCAAACCCTACCATCGTTGATGAGAAAGATGATGACATCCCTACTTTAACAGCCTCTGGAATTACATCTGGTAGCTTGCATCCAGTGTCACGCCGGACAAGAACTATGCGAAGGAGTGATCATAATGGTGATTCTTTTCAATTAGCAGATGGATTCCACAGGGCAGGTTCTGTTGATGGAAGCTCATCTATTGATTACCGTGAGGATGAGAGTGTTCATACTGGAGATTACCCAGATGGAGGTGCTTCGGATGGTTTGTCTTCTTGGGCAGGGGTTAATGGTAGTGAGGCACTATCTAAGGACTTCAGGAGCATGGGTTTCAAAATGCCACTTTGGTTATCAAATTCTACACCAAATGAATTCACTGAGGCTATGAAGAAA

Fln Alignment:

sp_v1.1_unigene9190___DEVVHGYHSGFNKAIHNYSQILRLFSESAESIAGLKSELGEAKKLLGSRNKQLHQLWYRSVTLRHIISLLDQIDNVAKVPARIDKLIAEKQYYAAVQLHLQSTSMLEREGIQGVGALQDVRSELSKLRGVLFYKVVEDLHNHLYNKGEYSSNPTIVDEKDDDIPTLTASGITSGSLHPVSRRTRTMRRSDHNGDSFQLADGFHRAGSVDGSSSIDYREDESVHTGDYPDGGASDGLSSWAGVNGSEALSKDFRSMGFKMPLWLSNSTPNEFTEAMKK
Q93YU5______________DEVVHAYHGGFNKAIQNYSQILRLFSESTEKIGDLKHDLAEAKQSLGARNKQLHQLWYRSVTLRHIISLLDQIEGIAKVPSRIEKLIADKQFYAAIQVYLQSSLMLEREGLQTVGALQDVRSELTKLRGALFFKILDDLHAHLYNRGEYSSVASSIYERDDEVPTTTAVAASRMSSQPLSRRTRTLKGDSQFGVR-GLTNGSYRTASNDESSSFDGHDEE--------DSVEHDESTADTARNGT-----DSKLLSHQLPPWLSDSTPDEFIEAVRK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
166	85		14		0.993533
320	71		28		1.0
322			28	71	1.0
323	28	71			1.0
328		28	71		1.0
329		28	71		1.0
330	28	71			1.0
331	28			71	1.0
333			28	71	1.0
335	71	28			1.0
337	71	28			1.0
341		28	71		1.0
365	80	20			0.995493
367		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain