SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9182

Length: 1971 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9182
CGTCGTGACCTTGGCTGTCACTCATTTTTTAAATAATCGGCGGTTTTCGGACGCAATAACCGTTGGAAGGTCAGAGAGAGCGAATTGCAGGAGAGATGAAGCTCGTGCACAGAGATATAGTTCCTCAGGGCCCTGGGAGCGTCAAGCTGATTCCGGAGGAGGCAGATGATTTATGGCACGTATACAACCTTGTTGCGAAAGGTGACAGGCTCTCTGCAGTGACTGTTAGGAAAGTGCAAAGAGAGTCCTCTTCTGGAGAAAGAGATGTAGAGCGCATTAAACTAAAACTGGAAATAGAGGTCGAGGCCATAGATTATGATAATGTGGGAGCTGTATTAAGGATTCGTGGCAAAAATGTTGTTGAGAATGAGCACGTCAAGATTGGAGCATTTCATACTCTTGAAATTGATGTGCAACGACCCTTTGTGTTAAGAAAGGATGTTTGGGATTCCATGGCTTTGGACACCCTTAAGCAGGCTTGTGATCCTGGAGCAAGTGCTGATCTAGCAGTGATCTTAATGCAAGAAGGTCTAGCAAACCTTCTTCTTGTTGGAAAAAGTGTGACGACAACAAGTGCCAGGATAGAAACATCAATTCCGCGCAAACGTGGTCCAGCTATTGCTGGCTACGAGAAGGCTTTAAACAAATTTTTCGAGAATGTTTTGCAGGCAGTTTTGAGGCACTGTGACTTCAGTATTGTCCGTTGTCTTGTAATTGCAAGTCCAGGTTTTACAAAGGATCAATTCTATAGCCGTTTGTTGCTTGAGGCCGAAAGACGAGAATTAAGATCCATTATAGAGAACAAGTCTCGGATTGTTCTTGCACATGCTTCTTCTGGATACAAGCATAGTCTTGGAGAGGTTCTTAATGCTCCTAATGTGATGTCCTTGATAAAAGATACCAAAGCAGCCCAGGAGGTAAAAGCACTCAAAGATTTTCACGAGATGATGTCAAATGATCCAACTCGACAAGGCTATGGTCCTAAACATGTTGAGGTAGCTAATGAGCAGTTGGCCATTCAAACGCTTCTCATCACAGATGAACTTTTCAGAAATTCAGATATTCTTACAAGGAGGAAATATGTTGAACTGATTGAGTCAGTCAAGAATACAGGAGGCACTGCACACATATTTTCTTCTATGCATGTATCTGGTGAACAGCTTGCTCAACTATCTGGAATAGCAGCTGTTTTAAGGTTTCCCATGCCAGAACTAGAAGATTTGGAGATGTGAGGGAATTTTGAATCAAAGCATTGACTGATCAGGCTGCATTACTATTTTAATAATCATTATCGATATTCAAATTGACCGCAGGGCAATACATGGAATCATGATTTCATTTGTTCTATAGCATTCCTTTGTTATTTCTGTTTGTGTTGTTGGGATTTGGCTGAAAAGATATATTTGCCACATTTTGTATGCCTAGTTTGAAACAAAGTTGTCAATTGAGTGTCAGTTGTAATACCCATATTCCTCCATGAGCATGAAGTATCTGGCAAACAAGTAGAGTGAGCAAGTAATAGAAAGCAACTTTACAAAGCACTTTAAATACTGAAAAGCATGTATTCTTGGCAAAGAAAGTTCTCGTAAGAGGAGTCCACTGCTTTGCTTGTTGCTTGGCTTTTCATGGTTTCTTGACAATAGTATCGGGAGAAACAATTCAAAACATGGTTGAGAAGTATATATGGCATTAGTGACTAGAAACATATGAAGGTGCATTACATTCAGATGTGGTGAGCTGGGCATCTTTCCTAGACGGCAGATTGAGGATGCTCAACCTTGCCTTATCTTTCACAAAGAGGAGACATTGTTTCATGAGTTTTTTGATCTTGCCGTTGGATTTGGTATTCTAATATGGTTTGCTTTGTGTGTTTATTTTCAGACATTGCAACTAACTCAATAACAACGATACACTTTTATTAGATGCATATGAGAGATATCTGAGTCTGAAGTGGTAATCTTTGTCAATTAT

Ace file of the UniGene sp_v1.1_unigene9182

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pelota n=2 Tax=Arabidopsis RepID=Q9ZT87_ARATH	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	74%
Blast2go	pelota-like protein	-	-	81%

Source	InterPros	Term	Type	Identity
Blast2go	Translation release factor pelota-like	IPR004405	-	81%
Blast2go	eRF1 domain 1/Pelota-like	IPR005140	-	81%
Blast2go	eRF1 domain 2	IPR005141	-	81%
Blast2go	eRF1 domain 3	IPR005142	-	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7MDT6

Fln msg:

Fln protein: MKLVHRDIVPQGPGSVKLIPEEADDLWHVYNLVAKGDRLSAVTVRKVQRESSSGERDVERIKLKLEIEVEAIDYDNVGAVLRIRGKNVVENEHVKIGAFHTLEIDVQRPFVLRKDVWDSMALDTLKQACDPGASADLAVILMQEGLANLLLVGKSVTTTSARIETSIPRKRGPAIAGYEKALNKFFENVLQAVLRHCDFSIVRCLVIASPGFTKDQFYSRLLLEAERRELRSIIENKSRIVLAHASSGYKHSLGEVLNAPNVMSLIKDTKAAQEVKALKDFHEMMSNDPTRQGYGPKHVEVANEQLAIQTLLITDELFRNSDILTRRKYVELIESVKNTGGTAHIFSSMHVSGEQLAQLSGIAAVLRFPMPELEDLEM*

Protein Length: 380

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTAAATAATCGGCGGTTTTCGGACGCAATAACCGTTGGAAGGTCAGAGAGAGCGAATTGCAGGAGAG_-_ATGAAGCTCGTGCACAGAGATATAGTTCCTCAGGGCCCTGGGAGCGTCAAGCTGATTCCGGAGGAGGCAGATGATTTATGGCACGTATACAACCTTGTTGCGAAAGGTGACAGGCTCTCTGCAGTGACTGTTAGGAAAGTGCAAAGAGAGTCCTCTTCTGGAGAAAGAGATGTAGAGCGCATTAAACTAAAACTGGAAATAGAGGTCGAGGCCATAGATTATGATAATGTGGGAGCTGTATTAAGGATTCGTGGCAAAAATGTTGTTGAGAATGAGCACGTCAAGATTGGAGCATTTCATACTCTTGAAATTGATGTGCAACGACCCTTTGTGTTAAGAAAGGATGTTTGGGATTCCATGGCTTTGGACACCCTTAAGCAGGCTTGTGATCCTGGAGCAAGTGCTGATCTAGCAGTGATCTTAATGCAAGAAGGTCTAGCAAACCTTCTTCTTGTTGGAAAAAGTGTGACGACAACAAGTGCCAGGATAGAAACATCAATTCCGCGCAAACGTGGTCCAGCTATTGCTGGCTACGAGAAGGCTTTAAACAAATTTTTCGAGAATGTTTTGCAGGCAGTTTTGAGGCACTGTGACTTCAGTATTGTCCGTTGTCTTGTAATTGCAAGTCCAGGTTTTACAAAGGATCAATTCTATAGCCGTTTGTTGCTTGAGGCCGAAAGACGAGAATTAAGATCCATTATAGAGAACAAGTCTCGGATTGTTCTTGCACATGCTTCTTCTGGATACAAGCATAGTCTTGGAGAGGTTCTTAATGCTCCTAATGTGATGTCCTTGATAAAAGATACCAAAGCAGCCCAGGAGGTAAAAGCACTCAAAGATTTTCACGAGATGATGTCAAATGATCCAACTCGACAAGGCTATGGTCCTAAACATGTTGAGGTAGCTAATGAGCAGTTGGCCATTCAAACGCTTCTCATCACAGATGAACTTTTCAGAAATTCAGATATTCTTACAAGGAGGAAATATGTTGAACTGATTGAGTCAGTCAAGAATACAGGAGGCACTGCACACATATTTTCTTCTATGCATGTATCTGGTGAACAGCTTGCTCAACTATCTGGAATAGCAGCTGTTTTAAGGTTTCCCATGCCAGAACTAGAAGATTTGGAGATGTGA___GGGAATTTTGAATCAAAGCATTGACTGATCAGGCTGCATTACTATTTTAATAATCATTATCGATATTCAAATTGACCGCAGGGCAATACATGGAATCATGATTTCATTTGTTCTATAGCATTCCTTTGTTATTTCTGTTTGTGTTGTTGGGATTTGGCTGAAAAGATATATTTGCCACATTTTGTATGCCTAGTTTGAAACAAAGTTGTCAATTGAGTGTCAGTTGTAATACCCATATTCCTCCATGAGCATGAAGTATCTGGCAAACAAGTAGAGTGAGCAAGTAATAGAAAGCAACTTTACAAAGCACTTTAAATACTGAAAAGCATGTATTCTTGGCAAAGAAAGTTCTCGTAAGAGGAGTCCACTGCTTTGCTTGTTGCTTGGCTTTTCATGGTTTCTTGACAATAGTATCGGGAGAAACAATTCAAAACATGGTTGAGAAGTATATATGGCATTAGTGACTAGAAACATATGAAGGTGCATTACATTCAGATGTGGTGAGCTGGGCATCTTTCCTAGACGGCAGATTGAGGATGCTCAACCTTGCCTTATCTTTCACAAAGAGGAGACATTGTTTCATGAGTTTTTTGATCTTGCCGTTGGATTTGGTATTCTAATATGGTTTGCTTTGTGTGTTTATTTTCAGACATTGCAACTAACTCAATAACAACGATACACTTTTATTAGATGCATATGAGAGATATCTGAGTCTGAAGTGGTAATCTTTGTCAATTAT

Fln Alignment:

sp_v1.1_unigene9182___MKLVHRDIVPQGPGSVKLIPEEADDLWHVYNLVAKGDRLSAVTVRKVQRESSSGERDVERIKLKLEIEVEAIDYDNVGAVLRIRGKNVVENEHVKIGAFHTLEIDVQRPFVLRKDVWDSMALDTLKQACDPGASADLAVILMQEGLANLLLVGKSVTTTSARIETSIPRKRGPAIAGYEKALNKFFENVLQAVLRHCDFSIVRCLVIASPGFTKDQFYXXXXXXXXXXXXXXXXXNKSRIVLAHASSGYKHSLGEVLNAPNVMSLIKDTKAAQEVKALKDFHEMMSNDPTRQGYGPKHVEVANEQLAIQTLLITDELFRNSDILTRRKYVELIESVKNTGGTAHIFSSMHVSGEQLAQLSGIAAVLRFPMPELEDLEM
D7MDT6______________MKIVRRDFVRNGPGSVKMVAEDSDDLWYAYNLIAVGDSVMAVTFRKVQREIPGGGRDSERVKLKLEVQVEEVDYDKDGSVLRIRGKNILENEHVKIGAFHTLELELKRPFVLRKEIWDSMALDTLKQASDPAASADLAVVLMQEGLAQIFLVGRSVTSSRARIETSIPRKHGPAIAGYESALKKFFENVLQAFVKHVDFSVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTNSGYRHSLGEVLHAPNVMNMIKDTKAAKEVKALNDFHTMLSNEPDRACYGPKHVEVANERMAIQTLLITDELFRNSDVKTRKKYVNLVESVKDSGGEAFIFSAMHVSGEQLAQLTGIAALLRFPLPELEDIEM

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
140		33		66	0.997452
143		33		66	0.997452
212	12	87			0.992554
218	75	25			1.0
219			75	25	1.0
222	75		25		1.0
227		37		62	1.0
229		25	75		1.0
230			71	28	1.0
231	71	28			1.0
275		14		85	0.993533
276	14		85		0.993533
338	28		71		1.0
1038		83	16		0.994512
1039	83		16		0.994512
1059			33	66	1.0
1175	25	75			1.0
1251	90		10		0.90298
1278		12		87	0.992554
1313		85	14		0.993533
1342	85		14		0.993533
1354			87	12	0.992554
1355		87	12		0.992554
1356	87		12		0.992554
1357			12	87	0.992554
1467	88		11		0.923564
1468		11	11	77	0.968132
1494	22		77		0.999999
1545	85	14			0.993533
1548		14		85	0.993533
1549			14	85	0.993533
1550	85			14	0.993533
1551	85		14		0.993533
1553		14		85	0.993533
1554	85	14			0.993533
1555		85		14	0.993533
1558	85		14		0.993533
1559	85	14			0.993533
1560	85			14	0.993533
1561	85		14		0.993533
1562			85	14	0.993533
1565		14		85	0.993533
1566			85	14	0.993533
1567		14		85	0.993533
1582	85		14		0.993533
1593	77	22			0.999999
1595	77			22	0.999999
1597	22		77		0.999999
1598	77	22			0.999999
1599		22	77		0.999999
1601		77		22	0.999999
1602		77	22		0.999999
1603	77		22		0.999999
1609	11	11		77	0.968132
1610		11		88	0.923564
1611		11		88	0.923564
1612	11	11	77		0.968132
1613	11	88			0.923564
1627		11		88	0.923564
1629		11		88	0.923564
1690		12		87	0.992554
1699		14		85	0.993533
1709		14		85	0.993533
1732	14	85			0.993533
1765	28		71		1.0
1769	14		85		0.993533
1826		25		75	0.996473
1828			25	75	0.996473
1829			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain