SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9175

Length: 993 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9175

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein L4 n=1 Tax=Pinus monticola RepID=D3IZ08_PINMO	-	-	93%
FL-Next	tr=Thaumatin-like protein L4; Pinus monticola (Western white pine) (Strobus monticola).	-	-	93%
Blast2go	thaumatin-like protein	-	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D3IZ08

Fln msg:

Fln protein: MEARTLSVSISVTVTLALIFTVYLQGVTGATFAIQNQCSYTVWAAGIPVGGGKALGQGETWSVDVPAGTSAGRFWGRTGCSFDASGQGKCNTGDCGGLLNCQGSGQPPATLAEYTLNGGNNRDTYDISLVDGFNIPLSITPSDATCTAPTCSSNVNTVCPAELKVTDGCNSACVAFNTPQYCCTGDYVNNCSPTNYSKIFKDQCPQAYSYAKDDTSSTFTCASGANYKIVFCP*

Protein Length: 235

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGACGCCATCGTCGTGACCTTGGCTGTCACTCAGTATTGTAGTACTGAAATTTAAGCGCAATTTATTGTATTGTAGTAGTGAAATTTAACTCGCTGGCTGGTTGTTGCA_-_ATGGAGGCAAGAACTTTATCAGTTTCGATTTCGGTTACAGTAACACTAGCATTGATATTTACCGTTTATCTTCAAGGAGTTACAGGTGCAACATTTGCTATCCAGAACCAGTGTTCATACACGGTTTGGGCGGCAGGAATTCCCGTAGGTGGCGGGAAAGCGTTGGGACAGGGCGAAACATGGAGTGTTGACGTTCCCGCAGGAACAAGTGCTGGCAGGTTCTGGGGGCGTACCGGTTGCTCCTTCGACGCATCCGGTCAAGGCAAATGCAACACTGGGGACTGTGGCGGGTTGCTCAATTGCCAAGGTTCAGGGCAGCCTCCTGCAACACTTGCTGAATATACTCTGAATGGTGGCAACAATCGAGACACGTATGACATCTCTCTCGTTGATGGTTTCAATATCCCCCTCTCCATAACTCCCTCCGACGCTACTTGCACAGCACCCACCTGTAGCAGCAACGTAAATACCGTCTGCCCTGCAGAACTGAAAGTGACTGATGGATGCAACAGCGCCTGTGTAGCTTTCAACACCCCTCAATACTGCTGCACTGGGGACTACGTGAACAATTGCTCTCCTACCAACTATTCCAAAATATTCAAGGATCAATGCCCACAGGCCTACAGCTATGCAAAGGATGATACTTCAAGCACGTTCACCTGTGCTTCTGGTGCAAACTACAAAATTGTCTTCTGCCCTTGA___TGGTGCCATAAAATCCGTTTCATAAATAAACTCATTTCCATGTAATAACGAATACCATCGTATTCACAAAGTTCTATCCCATAAATAAAGGTTATTGAAGTGATTGTTACAATTGAGATGCAAAGATTAAAATATATATATTTCAACTCACGTTTATC

Fln Alignment:

sp_v1.1_unigene9175___MEARTLSVSISVTVTLALIFTVYLQGVTGATFAIQNQCSYTVWAAGIPVGGGKALGQGETWSVDVPAGTSAGRFWGRTGCSFDASGQGKCNTGDCGGLLNCQGSGQPPATLAEYTLNGGNNRDTYDISLVDGFNIPLSITPSDATCTAPTCSSNVNTVCPAELKVTDGCNSACVAFNTPQYCCTGDYVNNCSPTNYSKIFKDQCPQAYSYAKDDTSSTFTCASGANYKIVFCP
D3IZ08______________MEARTLSVSISVAVTLALIFNVYLPGVTGATFAIQNQCSYTVWAAGIP-GGGKALGQGESWSVDVPAGTSAGRFWGRTSCSFDASGQGKCSTGDCGGLLNCQASGQPPATLAEYTLNGGNNRDTYDISLVDGFNIPLSITPSDASCTAPTCSSNINTICPSELKVTDGCNSACVAFNTPQYCCTGDYLTNCSPTNYSKIFKDQCPQAYSYAKDDAPSTFTCASGANYKIVFCP

SNPs (tot: 3)

Position	A %	G %	T %	Probability
838	14	85		0.999981
935	28	71		1.0
959	66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain