SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9173

Length: 1949 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene9173
ACTGGTTTCCATTACGAGTTGATAAGAAGGAGCCATTACTTCTTTGTATTGCAGGCGCAGATAGTAGCTTTCGTCTCCTGGAAGTTAATACTCAAGGAAGCAAACCAGTTCAAGTATTGGAGGGGAAGGCTGTAATGAATAGATTTAGGCCAATGCCTTTGTGCTCACCAGTCTTACTTCCTCCTCCACATGCATTGGCTCTGCGTATGCTATTGCAATGGGGAGTCCAGCCTTCCTGGTTTGACATTGACAAAACATCCAGAGATACTGAGCATCTTGTACATACACCTGGAATGCCTTCAACCATAGACGAAACAGATTTTCGACATTATATGCTGGATACATCGTTTCCCTTGATTGGTGATACCGTTGTTCCAGAATTGCTACTAAAAATATTAGAACCTTATCGAAAAGCAGGTCGATTATTGGATAATGAAAGGGCAAAGACATATGCAGCTTTGCTGCATAAAGGCTGTACAGCAAGATTTGCTTTTGCTGCTGCACAGTTTGGGGACTTCTCAGAAGCTCTTTTCTGGTTACAGCTGCCCTATGTCCTTTCTTGTCTGACTGAGCAGTTACATGACAAATCTCTTCAACATAAAAGCCCTATTAAAGCCTCTTCTGAACCAAGCACATCAGATGAATTGCACACAAGGAGGTCAGTGGAGAGTGTGGCATCTTTGAAGGGAGCTAAACATGAGAAGTCAGCGTTTTCAGCATTAGGCTTGCAAGATTGTAGCTATTCCACATTGCAACTGACATATGGAGAATCTGATGTCTCGCCATCAAGCCAAGTATCTTTGCGTGCAAATGCCCTAGAAAGGATATCATGGCATGAAAAGTTACGTGGAGAAAATGCATTGCAAAAACGTGTTCACGAGCTTGTAGCTGTGGGGAGACTTGAAGATGCTATAACATTGTTACTTTCTACCCCACCTGATAGCCCTTATTTCTATGTTGATGCTCTACGAGCTGTTGCCCTTTCATCTGCTGTCTCTTCAGCCTTGCACGAGCTTGCTGTTAAGGTAGTTGCAGCCAATTTGGTGGGCACTGACAAATCCTTGTCAGGAACACACTTACTTTGTGCTGTTGGCCGTTATCAAGAAGCCTGTTCACAGCTTCAAGATGCAGGCTGTTGGACAGATGCTGCAACGTTAGCTGCCACTCACCTCCAAGGATCTGATTATTCCAGGGTCTTGCAAAGGTGGGCTGATCATGTTCTTCAAAATGATCATAACATTTGGAGGGCAATGCTTTTGTATGTTGCTGCTGGTGCATTACATGAGGTTTTGGCAGTTCTTCGTGATGCACAAGAACCTGACACAGCAGCCATGTTTCTACTAGCATGTCACGAAATCAAAGTGAAAGTTGCATCCCAAAAATCTGGAGTTGAATGTAATGCATTGCCCAAATCAGACAGCCAAGTTCAAGGAAATGCCAACAGCTTGGATTTACCTGGTGATTTGAATCAACAAAAGGAAGATGTTTCAGTAGTTTGTGAGTATTATGGGCACTACCAAAGAACATTGGTTCGTTTATGCACAGATTTGGCACCGGTTTTGGATTGAACTCAATATTACATTGAAAAGAGAGGAACATAGGTTTTTGGGAGGATATCACTCATGATTGTTTTCTCTGTGATTCCTCTACATGATGACTTGTAGTCCTGAAATATTTTGGAAGGTGAAAATATTAACTCAATTTTTCAGGAGCTAGCACATGGATGACAACTGACGAGATTGTGCATTTCAAATGTTCTTTAGTCCAATGTATTCTGATTGATTGTAATGCACTCGTGCTGCTGTTATCACTCAACATTTCGAAGGAGGAGCTTTGAAGCTCTTCACTTTCACAGCTGTGATTGTGTAATTACCCTGTCAACTTGCATTATTAATTTTATTCAGTTTAATGATTTATTTGTACAAGTGGACAAGAATTAATGCGTATTC

Ace file of the UniGene sp_v1.1_unigene9173 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9SMG7_RICCO	-	-	52%
FL-Next	tr=Nucleotide binding protein, putative; Ricinus communis (Castor bean).	-	-	57%
Blast2go	transducin family protein wd-40 repeat family protein	-	-	65%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SMG7

Fln msg: your sequence is shorter than subject: 522 - 1357

Fln protein: WFPLRVDKKEPLLLCIAGADSSFRLLEVNTQGSKPVQVLEGKAVMNRFRPMPLCSPVLLPPPHALALRMLLQWGVQPSWFDIDKTSRDTEHLVHTPGMPSTIDETDFRHYMLDTSFPLIGDTVVPELLLKILEPYRKAGRLLDNERAKTYAALLHKGCTARFAFAAAQFGDFSEALFWLQLPYVLSCLTEQLHDKSLQHKSPIKASSEPSTSDELHTRRSVESVASLKGAKHEKSAFSALGLQDCSYSTLQLTYGESDVSPSSQVSLRANALERISWHEKLRGENALQKRVHELVAVGRLEDAITLLLSTPPDSPYFYVDALRAVALSSAVSSALHELAVKVVAANLVGTDKSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLQGSDYSRVLQRWADHVLQNDHNIWRAMLLYVAAGALHEVLAVLRDAQEPDTAAMFLLACHEIKVKVASQKSGVECNALPKSDSQVQGNANSLDLPGDLNQQKEDVSVVCEYYGHYQRTLVRLCTDLAPVLD*

Protein Length: 523

Fln nts: ACTGGTTTCCATTACGAGTTGATAAGAAGGAGCCATTACTTCTTTGTATTGCAGGCGCAGATAGTAGCTTTCGTCTCCTGGAAGTTAATACTCAAGGAAGCAAACCAGTTCAAGTATTGGAGGGGAAGGCTGTAATGAATAGATTTAGGCCAATGCCTTTGTGCTCACCAGTCTTACTTCCTCCTCCACATGCATTGGCTCTGCGTATGCTATTGCAATGGGGAGTCCAGCCTTCCTGGTTTGACATTGACAAAACATCCAGAGATACTGAGCATCTTGTACATACACCTGGAATGCCTTCAACCATAGACGAAACAGATTTTCGACATTATATGCTGGATACATCGTTTCCCTTGATTGGTGATACCGTTGTTCCAGAATTGCTACTAAAAATATTAGAACCTTATCGAAAAGCAGGTCGATTATTGGATAATGAAAGGGCAAAGACATATGCAGCTTTGCTGCATAAAGGCTGTACAGCAAGATTTGCTTTTGCTGCTGCACAGTTTGGGGACTTCTCAGAAGCTCTTTTCTGGTTACAGCTGCCCTATGTCCTTTCTTGTCTGACTGAGCAGTTACATGACAAATCTCTTCAACATAAAAGCCCTATTAAAGCCTCTTCTGAACCAAGCACATCAGATGAATTGCACACAAGGAGGTCAGTGGAGAGTGTGGCATCTTTGAAGGGAGCTAAACATGAGAAGTCAGCGTTTTCAGCATTAGGCTTGCAAGATTGTAGCTATTCCACATTGCAACTGACATATGGAGAATCTGATGTCTCGCCATCAAGCCAAGTATCTTTGCGTGCAAATGCCCTAGAAAGGATATCATGGCATGAAAAGTTACGTGGAGAAAATGCATTGCAAAAACGTGTTCACGAGCTTGTAGCTGTGGGGAGACTTGAAGATGCTATAACATTGTTACTTTCTACCCCACCTGATAGCCCTTATTTCTATGTTGATGCTCTACGAGCTGTTGCCCTTTCATCTGCTGTCTCTTCAGCCTTGCACGAGCTTGCTGTTAAGGTAGTTGCAGCCAATTTGGTGGGCACTGACAAATCCTTGTCAGGAACACACTTACTTTGTGCTGTTGGCCGTTATCAAGAAGCCTGTTCACAGCTTCAAGATGCAGGCTGTTGGACAGATGCTGCAACGTTAGCTGCCACTCACCTCCAAGGATCTGATTATTCCAGGGTCTTGCAAAGGTGGGCTGATCATGTTCTTCAAAATGATCATAACATTTGGAGGGCAATGCTTTTGTATGTTGCTGCTGGTGCATTACATGAGGTTTTGGCAGTTCTTCGTGATGCACAAGAACCTGACACAGCAGCCATGTTTCTACTAGCATGTCACGAAATCAAAGTGAAAGTTGCATCCCAAAAATCTGGAGTTGAATGTAATGCATTGCCCAAATCAGACAGCCAAGTTCAAGGAAATGCCAACAGCTTGGATTTACCTGGTGATTTGAATCAACAAAAGGAAGATGTTTCAGTAGTTTGTGAGTATTATGGGCACTACCAAAGAACATTGGTTCGTTTATGCACAGATTTGGCACCGGTTTTGGATTGA___ACTCAATATTACATTGAAAAGAGAGGAACATAGGTTTTTGGGAGGATATCACTCATGATTGTTTTCTCTGTGATTCCTCTACATGATGACTTGTAGTCCTGAAATATTTTGGAAGGTGAAAATATTAACTCAATTTTTCAGGAGCTAGCACATGGATGACAACTGACGAGATTGTGCATTTCAAATGTTCTTTAGTCCAATGTATTCTGATTGATTGTAATGCACTCGTGCTGCTGTTATCACTCAACATTTCGAAGGAGGAGCTTTGAAGCTCTTCACTTTCACAGCTGTGATTGTGTAATTACCCTGTCAACTTGCATTATTAATTTTATTCAGTTTAATGATTTATTTGTACAAGTGGACAAGAATTAATGCGTATTC

Fln Alignment:

sp_v1.1_unigene9173___WFPLRVDKKEPLLLCIAGADSSFRLLEVNTQGSKPVQVLEGKAVMNRFRPMPLCSXXXXXXXXXXXXXXXLQWGVQPSWFDIDKTSRDTEHLVHTPGMPSTIDETDFRHYMLDTSFPLIGDTVVPELLLKILEPYRKAGRLLDNERAKTYAALLHKGCTARFAFAAAQFGDFSEALFWLQLPYVLSCLTEQLHDKSLQHKSPIKASSEPSTSDELHTRRSVESVASLKGAKHEKSAFSALGLQDCSYSTLQLTYGESDVSPSSQVSLRANALERISWHEKLRGENALQKRVHELVAVGRLEDAITLLLSTPPDSPYFYXXXXXXXXXXXXXXXXXXXXXVKVVAANLVGTDKSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLQGSDYSRVLQRWADHVLQNDHNIWRAMLLYVAAGALHEVLAVLRDAQEPDTAAMFLLACHEIKVKVASQKSGVECNALPKSDSQVQGNANSLDLPGDLNQQKEDVSVVCEYYGHYQRTLVRLCTDLAPVLD
B9SMG7______________WLPVRTDKNDPLVLCIAGADSSFRLVEVNVNDKKPGYGLHSRAIKERFRPMPICSPILFPTPHALALRMILQLGVEPSWFNTCGTTID-KRLHSIPG--TALPAADLRSYMID--LPRIGDSVVPEMLLKVLEPYRKEGCILDDERARLYATIVHKGYAVRFAFAAAVFGETSEAIFWLQLPQALKHLMNKLVNKSPQ-KVPISALI-PDLDDTAMLNRIASKGKSVTGPEKRDS------LHKCQFRSMAF----------KQEELWENANERIPWHEKLEGEEAIQNRVHELVSVGNLEAAVSLLLSTSPDSSYFYANALRAVALSSAVSRSLHELAVKVVAANMVRTDRSLSGTHLLCAVGRHQEACSQLQDAGCWTDAATLAATHLRGSDYARVLQRWAEHVLRAEHNIWRALVLFVAAGALQEALAALREAQQPDTAAMFILACREIHEEIISNLGNSDDESGTVKDTQV-------DLPG-LNPENEDVIAVGEYFGQYQRKLVHLCMDSQPFSD

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
244	83		16		0.994512
311	25	75			1.0
321		87		12	0.992554
322	87		12		0.992554
326	87		12		0.992554
330		12	87		0.992554
331	12			87	0.992554
333	87	12			0.992554
334		12		87	0.992554
336	12			87	0.992554
337		87	12		0.992554
338		87	12		0.992554
341	12	87			0.992554
343	87		12		0.992554
345	87	12			0.992554
346	87		12		0.992554
382			12	87	0.992554
383	12	87			0.992554
384	87	12			0.992554
386			12	87	0.992554
391	87		12		0.992554
392	87			12	0.992554
396	12		87		0.992554
397		12		87	0.992554
459		71	28		1.0
464	71	28			1.0
467	28			71	1.0
468		71	28		1.0
469			28	57	1.0
472	28	71			1.0
473		28		71	1.0
474			28	71	1.0
475	28			71	1.0
476		28		71	1.0
634	10			90	0.90298
635		10		90	0.90298
638	22			77	0.999999
643	22	77			0.999999
647	77	11			0.968132
649		11	88		0.923564
651	87			12	0.992554
794		11		88	0.923564
797		88	11		0.923564
800		11		88	0.923564
801	11		88		0.923564
803	88		11		0.923564
804	11		88		0.923564
806	88		11		0.923564
819	12	87			0.992554
820		87	12		0.992554
825			12	87	0.992554
829		12	87		0.992554
837		12	87		0.992554
839	85	14			0.993533
840		85	14		0.993533
842		14	85		0.993533
909	83	16			0.994512
910	83	16			0.994512
1041		33		66	0.997452
1380			33	66	1.0
1381		33	66		1.0
1382	33	33		33	1.0
1383		33	33	33	1.0
1384	33	33		33	1.0
1385		33	66		1.0
1386	33	33		33	1.0
1389			66	33	1.0
1390	50	50			1.0
1396	50			50	1.0
1397	50	50			1.0
1399		50	50		1.0
1403	50		50		1.0
1433			33	66	0.997452
1434			66	33	0.997452
1748	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain